Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00910 ATGGCTTCCATTGCCTCTTCTCTCCCCATCAAGCTCCATAGGCCCTCTTTGCTCGAATCCTCCTTCCATGGCTCCCCTTTGCTCCCTACTCCTTCTTTCCGCCTCAAACCCACCACCGCTGCCGCCTCCCTCTCCATCTCCGCCTCCGCCGCTCAGCCTCCCTACGATTTGAACCAATTCAAATTCAACCCCATCAGGGAGTCCATCGTCTCCCGGGAGATGACCCGCCGCTACATGACCGACATGATCACTTACGCCGACACTGATGTCATTGTTGTCGGAGCTGGATCCGCCGGTCTCTCTTGCGCTTATGAACTCAGCAAGGACCCCTCTGTTCGAGTCGCCATCATCGAACAATCCGTCAGCCCTGGCGGTGGTGCATGGCTTGGCGGCCAGCTCTTCTCTGCTATGGTAACAAATTCATTTCCCTTTCCATGTATACCCATAACGTCTCATTTTCTTTTTTTTTTTTTTTTTCTTCCATATTTGGATGGATGCTCTGTTTTTTGTTCTTTCATTGGAAATACCCAAAATTTTGAAAAACCCACACAGATTTTCATGATTTGTACTCATGCATGTCGTTTTAGAACCCCGAGATTGAATTTAATTGGGAGATTTGAAGTGGTGCGGAAGCCAGCCCATTACTTCTTGGACGAGCTGGAAGTGGAGTACGACGAACAAGAAGACTATGTCGTGATAAAGCACGCAGCTCTGTTCACATCAACGATCATGAGCAAGCTGTTGGCCCGGCCAAACGTGAAGCTGTTCAACGCCGTGGCGGCAGAGGATTTGATCGTGAAGGAAGGCAGAGTCGGCGGCGTGGTCACCAACTGGGCGCTGGTGTCCATGAACCACGACACACAGTCTTGCATGGACCCCAATGTGATGGAAGCTAAGGTCGTGGTGAGCTCATGCGGGCACGACGGACCATTCGGCGCCACGGGAGTGAAGCGGCTGAAGAGCATCGGGATGATCGACAGCGTGCCGGGAATGAAGGCGCTGGACATGAACTCGGCGGAGGATGCCATTGTTAGATTCACGAGAGAGGTGGTGCCGGGAATGATTGTGACAGGGATGGAGGTTGCGGAGATCGACGGAGCGCCAAGAATGGGGCCGACGTTCGGGGCGATGATGATATCAGGGCAGAAGGCGGCGCACTTGGCGCTGAAGGCGTTGGGGAAGACGAACAGCATTGATGGGGAAGTGGAAGCAGCAGAGATGGTACTGGCGGCGGGAGAGACGCCGGAGGTTGCAGATGCTTGA 1263 53.6 MASIASSLPIKLHRPSLLESSFHGSPLLPTPSFRLKPTTAAASLSISASAAQPPYDLNQFKFNPIRESIVSREMTRRYMTDMITYADTDVIVVGAGSAGLSCAYELSKDPSVRVAIIEQSVSPGGGAWLGGQLFSAMVTNSFPFPCIPITSHFLFFFFFLPYLDGCSVFCSFIGNTQNFEKPTQIFMICTHACRFRTPRLNLIGRFEVVRKPAHYFLDELEVEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKEGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNSAEDAIVRFTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGKTNSIDGEVEAAEMVLAAGETPEVADA 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5490878 5492427 - CmoCh16G009100.1 Cmo16g00910 399945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00910 420 Gene3D - 204 392 IPR036188 -
Cmo16g00910 420 Hamap Thiamine thiazole synthase, chloroplastic [THI4]. 2 401 IPR027495 GO:0009228
Cmo16g00910 420 Gene3D - 88 142 IPR036188 -
Cmo16g00910 420 PANTHER THIAMINE THIAZOLE SYNTHASE, CHLOROPLASTIC 2 139 - -
Cmo16g00910 420 TIGRFAM TIGR00292: thiazole biosynthesis enzyme 208 392 IPR002922 -
Cmo16g00910 420 PANTHER THIAMINE THIAZOLE SYNTHASE 2 139 - -
Cmo16g00910 420 PANTHER THIAMINE THIAZOLE SYNTHASE 208 420 - -
Cmo16g00910 420 Pfam Thi4 family 71 139 - -
Cmo16g00910 420 Pfam Thi4 family 208 374 - -
Cmo16g00910 420 PANTHER THIAMINE THIAZOLE SYNTHASE, CHLOROPLASTIC 208 420 - -
Cmo16g00910 420 Gene3D - 56 86 - -
Cmo16g00910 420 SUPERFAMILY FAD/NAD(P)-binding domain 46 385 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00910 K03146 THI4, THI1; cysteine-dependent adenosine diphosphate thiazole synthase [EC:2.4.2.60] - csv:101211553 363.999
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01011 Cmo16g00910 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00910 Cmo-Chr16:5490878 Cmo04g01011 Cmo-Chr4:5081544 4.16E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g456 . . . . Bpe09g00188 . . Bma13g01034 Cmo16g00910 Cmo04g01011 . . . . . . . . . . . . . . Cla10g00528 Cam10g0522 Cec10g0539 Cco10g0529 Clacu10g0544 Cmu10g1370 Cre10g0773 . . . . . Csa03g00534 . Cme06g02280 Blo07g00918 Blo10g00810 Bda05g00733 Bda12g00895 . Bpe03g00802 . . Sed09g0362 . . Cma04g00941 Cma16g00849 Car04g00879 Car16g00855 . Cpe01g00853 Bhi11g00650 Tan01g1679 Cmetu06g1989 . . Mch10g1226 . . . . . . . . Lsi05g00622 . Chy06g01796 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007369 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00910 Cmo_Chr16 FPKM 9.876259 10.236217 12.230323 12.716258 11.741362 10.244555 10.704901 22.037094 20.480999 19.325163