Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g00916 | ATGGTATCCCCTGAAACCACCAATTGGCTCTTCGATTATGCGTTAATGGATGATATTCCTGTTGCCGATGCAAATTTCTCTGCCCCCACTGCCGGCTTCTCCTGGTCCATGCCAACGCTCAACGCCTCCTCCAATGTCAGCACGGAAATTGAAGGATCATTGTTCGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGGTCAGAACTGAAACAAGTTGCGCATCTAGCTCAAAAGCATGTCGGGAGAAGCTGCGGAGGGACAGACTAAATGACAAGTTTCTGGAATTGGGAGCTATTTTGGAGCCCGGAAGACCACCTAAGACCGACAAGGCTGCCATTTTGATTGATGCTGTTCGAATTGTCGCTCAGTTACGTGGTGAAGCGAAGATGTTGAAAGATTCAAATACAAGTCTATCAGAGAAGATTAAAGAGTTGAAGGCTGAAAAGAATGAGCTTCGTGATGAGAAGCAGAGGTTAAAAATGGAGAAAGAGAAGTTGGAGCAGCAACTAAAAGACATGAATTCACAACCTGGCTTCTTGCCTCCAGCCATCCCTCCCACTTTTGCTGCTCAAGGCCAAGCAGCTGGAAACAAGTTGGTTCCTTTCATCAGCTACCCAGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCGGTCGACACCTCACAAGATCACGTACTCCGCCCTCCTGTTGCTTAA | 705 | 48.23 | MVSPETTNWLFDYALMDDIPVADANFSAPTAGFSWSMPTLNASSNVSTEIEGSLFESDGLKEPGSKKRVRTETSCASSSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKAAILIDAVRIVAQLRGEAKMLKDSNTSLSEKIKELKAEKNELRDEKQRLKMEKEKLEQQLKDMNSQPGFLPPAIPPTFAAQGQAAGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 5522341 | 5526639 | + | CmoCh16G009160.1 | Cmo16g00916 | 399951 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g00916 | 234 | CDD | bHLH_AtILR3_like | 80 | 155 | - | - | |
Cmo16g00916 | 234 | PANTHER | BHLH TRANSCRIPTION FACTOR | 1 | 234 | IPR044818 | GO:0003700|GO:0006355|GO:0046983|GO:0055072 | |
Cmo16g00916 | 234 | Coils | Coil | 123 | 178 | - | - | |
Cmo16g00916 | 234 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 75 | 126 | IPR011598 | GO:0046983 | |
Cmo16g00916 | 234 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 80 | 150 | IPR036638 | GO:0046983 | |
Cmo16g00916 | 234 | Pfam | Helix-loop-helix DNA-binding domain | 79 | 126 | IPR011598 | GO:0046983 | |
Cmo16g00916 | 234 | PANTHER | BHLH DOMAIN CLASS TRANSCRIPTION FACTOR | 1 | 234 | - | - | |
Cmo16g00916 | 234 | SMART | finulus | 81 | 132 | IPR011598 | GO:0046983 | |
Cmo16g00916 | 234 | Gene3D | - | 69 | 155 | IPR036638 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo09g00921 | Cmo16g00916 | CCT | |
Cmo01g01205 | Cmo16g00916 | CCT | |
Cmo09g00921 | Cmo16g00916 | ECH | |
Cmo01g01205 | Cmo16g00916 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00151 | Cmo-Chr2:740367 | Cmo16g00916 | Cmo-Chr16:5522341 | 1.05E-97 | dispersed | |
Cmo06g01337 | Cmo-Chr6:9943050 | Cmo16g00916 | Cmo-Chr16:5522341 | 1.99E-46 | dispersed | |
Cmo09g00921 | Cmo-Chr9:4812733 | Cmo16g00916 | Cmo-Chr16:5522341 | 2.27E-115 | dispersed | |
Cmo11g00157 | Cmo-Chr11:791208 | Cmo16g00916 | Cmo-Chr16:5522341 | 1.88E-14 | dispersed | |
Cmo13g00728 | Cmo-Chr13:7265344 | Cmo16g00916 | Cmo-Chr16:5522341 | 1.75E-79 | dispersed | |
Cmo14g01842 | Cmo-Chr14:13948716 | Cmo16g00916 | Cmo-Chr16:5522341 | 2.08E-52 | dispersed | |
Cmo16g00916 | Cmo-Chr16:5522341 | Cmo20g00606 | Cmo-Chr20:2970707 | 2.71E-98 | dispersed | |
Cmo01g01205 | Cmo-Chr1:9755296 | Cmo16g00916 | Cmo-Chr16:5522341 | 4.70E-119 | wgd | |
Cmo16g00916 | Cmo-Chr16:5522341 | Cmo04g01008 | Cmo-Chr4:5073534 | 1.61E-140 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11312 | PF00010 | HLH | 1.80E-09 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g00916 | - | - | zju:107431674 | 361.303 |