Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00916 ATGGTATCCCCTGAAACCACCAATTGGCTCTTCGATTATGCGTTAATGGATGATATTCCTGTTGCCGATGCAAATTTCTCTGCCCCCACTGCCGGCTTCTCCTGGTCCATGCCAACGCTCAACGCCTCCTCCAATGTCAGCACGGAAATTGAAGGATCATTGTTCGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGGTCAGAACTGAAACAAGTTGCGCATCTAGCTCAAAAGCATGTCGGGAGAAGCTGCGGAGGGACAGACTAAATGACAAGTTTCTGGAATTGGGAGCTATTTTGGAGCCCGGAAGACCACCTAAGACCGACAAGGCTGCCATTTTGATTGATGCTGTTCGAATTGTCGCTCAGTTACGTGGTGAAGCGAAGATGTTGAAAGATTCAAATACAAGTCTATCAGAGAAGATTAAAGAGTTGAAGGCTGAAAAGAATGAGCTTCGTGATGAGAAGCAGAGGTTAAAAATGGAGAAAGAGAAGTTGGAGCAGCAACTAAAAGACATGAATTCACAACCTGGCTTCTTGCCTCCAGCCATCCCTCCCACTTTTGCTGCTCAAGGCCAAGCAGCTGGAAACAAGTTGGTTCCTTTCATCAGCTACCCAGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCGGTCGACACCTCACAAGATCACGTACTCCGCCCTCCTGTTGCTTAA 705 48.23 MVSPETTNWLFDYALMDDIPVADANFSAPTAGFSWSMPTLNASSNVSTEIEGSLFESDGLKEPGSKKRVRTETSCASSSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKAAILIDAVRIVAQLRGEAKMLKDSNTSLSEKIKELKAEKNELRDEKQRLKMEKEKLEQQLKDMNSQPGFLPPAIPPTFAAQGQAAGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5522341 5526639 + CmoCh16G009160.1 Cmo16g00916 399951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00916 234 CDD bHLH_AtILR3_like 80 155 - -
Cmo16g00916 234 PANTHER BHLH TRANSCRIPTION FACTOR 1 234 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cmo16g00916 234 Coils Coil 123 178 - -
Cmo16g00916 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Cmo16g00916 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983
Cmo16g00916 234 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Cmo16g00916 234 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 234 - -
Cmo16g00916 234 SMART finulus 81 132 IPR011598 GO:0046983
Cmo16g00916 234 Gene3D - 69 155 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo09g00921 Cmo16g00916 CCT
Cmo01g01205 Cmo16g00916 CCT
Cmo09g00921 Cmo16g00916 ECH
Cmo01g01205 Cmo16g00916 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00151 Cmo-Chr2:740367 Cmo16g00916 Cmo-Chr16:5522341 1.05E-97 dispersed
Cmo06g01337 Cmo-Chr6:9943050 Cmo16g00916 Cmo-Chr16:5522341 1.99E-46 dispersed
Cmo09g00921 Cmo-Chr9:4812733 Cmo16g00916 Cmo-Chr16:5522341 2.27E-115 dispersed
Cmo11g00157 Cmo-Chr11:791208 Cmo16g00916 Cmo-Chr16:5522341 1.88E-14 dispersed
Cmo13g00728 Cmo-Chr13:7265344 Cmo16g00916 Cmo-Chr16:5522341 1.75E-79 dispersed
Cmo14g01842 Cmo-Chr14:13948716 Cmo16g00916 Cmo-Chr16:5522341 2.08E-52 dispersed
Cmo16g00916 Cmo-Chr16:5522341 Cmo20g00606 Cmo-Chr20:2970707 2.71E-98 dispersed
Cmo01g01205 Cmo-Chr1:9755296 Cmo16g00916 Cmo-Chr16:5522341 4.70E-119 wgd
Cmo16g00916 Cmo-Chr16:5522341 Cmo04g01008 Cmo-Chr4:5073534 1.61E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11312 PF00010 HLH 1.80E-09 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00916 - - zju:107431674 361.303