Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00922 ATGGGTTTCTATTCCATGTACGGACATGTTGAGAGACTTGCAGAAGAGATTAAGAAGGGGGCTGAATCTGTAGAAGGTGTTGAAGCCAAGTTGTGGCAGGTTCCCGAAACTTTACCAGAGGAAGTCCTTGGAAAGATGAGTGCACCACCTAAGAGTGATGTACCAATAATCACCCCTAGTGAACTCTCCGACGCCGATGGGTTTGTTTTTGGCTTCCCGACTAGATTTGGGATGATGGCTGCTCAATTCAAAGCATTTCTGGATGCCACTGGAGGTCTTTGGAGAACCCAACAACTCGCAGGCAAGCCTGCTGGTATCTTTTATAGTACCGGATCCCAGGGAGGTGGTCAAGAAACTACCGCGTTGACTGCCATCACTCAACTGGTTCACCATGGAATGATATTCGTACCGATTGGTTACACTTTTGGTGCTGGCATGTTCGAGATGGAGCACGTTAAAGGTGGAAGTCCATATGGAGCTGGAACTTTCGCAGGTGATGGCTCGAGACAACCATCCACTCTTGAGTTAGAGCAAGCCTTCCACCAAGGAAAGTACCTTGCTACCATCACAAAGAAGCTCAAGGGATCAGCCTAA 594 48.15 MGFYSMYGHVERLAEEIKKGAESVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPSELSDADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGIFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEHVKGGSPYGAGTFAGDGSRQPSTLELEQAFHQGKYLATITKKLKGSA 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5616846 5620190 + CmoCh16G009220.1 Cmo16g00922 399957

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00922 197 ProSiteProfiles Flavodoxin-like domain profile. 1 186 IPR008254 GO:0010181
Cmo16g00922 197 Coils Coil 10 30 - -
Cmo16g00922 197 PANTHER FLAVOPROTEIN WRBA, FLAVOPROTEIN-LIKE DOMAIN PROTEIN-RELATED 2 197 - -
Cmo16g00922 197 Gene3D - 2 195 IPR029039 -
Cmo16g00922 197 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 3 193 IPR010089 GO:0003955|GO:0010181
Cmo16g00922 197 Pfam NADPH-dependent FMN reductase 11 138 IPR005025 GO:0016491
Cmo16g00922 197 PANTHER FLAVODOXIN-RELATED PROTEIN WRBA-RELATED 2 197 - -
Cmo16g00922 197 SUPERFAMILY Flavoproteins 3 194 IPR029039 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00922 K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] - csv:101209481 373.629
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00757 Cmo-Chr2:4738493 Cmo16g00922 Cmo-Chr16:5616846 5.62E-98 dispersed
Cmo07g00280 Cmo-Chr7:1373502 Cmo16g00922 Cmo-Chr16:5616846 6.36E-117 dispersed
Cmo03g00799 Cmo-Chr3:6509606 Cmo16g00922 Cmo-Chr16:5616846 1.14E-92 transposed
Cmo16g00922 Cmo-Chr16:5616846 Cmo04g01000 Cmo-Chr4:5037559 1.71E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g333 . . . . . . . . Cmo16g00922 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe01g00368 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g383 . . . . Bpe09g00207 . Bma10g00523 Bma13g00995 Cmo16g00922 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0091 Cone9ag0120 Cone14ag1109 Cone15ag1123 . . . . Blo07g00931 Blo10g00789 Bda05g00749 Bda12g00874 . Bpe03g00814 . . . . . Cma04g00930 . Car04g00872 . . Cpe01g00845 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001002 3 2 2 5 4 3 4 2 3 2 2 2 4 2 2 4 2 3 2 3 2 2 2 3 3 3 2 3 3 1 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00922 Cmo_Chr16 FPKM 12.497861 11.200203 8.087663 9.533393 8.207428 7.565861 8.456225 11.541698 11.426191 14.043715