Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00923 ATGGCGGAGGAGTTTCAGAGCAGTGGAAATTGGTGGGAAGCTTCTAGAAGCCGCTACGAGGCCGGAATATCCCCTTCCTCCTCCTCCGCCGCCGCCGCTGCCGACCCCAATTTGCACATCACCGGCTTAGCCCTCGATTGGAACCAACCCCTCTTGGGAGGCGGCGAGAAGGCGGCGGAGGGCAGTTTCCGGTCTATGCTGCAGCCGGATAATATGAATTTGAATATGCTTCAAGAAACAGAACAACAACAACAGATTGAGTGGATGAGATCGGAGAAGGGAATAAACAGAGGATTTTCATTAGATCATCATCATCAGCAGTTCACCAGCCCTTCCCACTACAGCTCAACCGACAGCGCCGTCACCACTTTCCCAATCGACACCACCACCGCCGCCACCACTCTGTACGGAAACTCCACAACACTATTACAAGGCTTATTAGGCGGCGAGCAACAGCAAGTCTCAGCAGCAGGTATGAACTTCCCTTACAATTCCCATTACGGGATAAACTCCAACGACTTCATGGCAGCGGGTGCGTCATGGTCGCCGTCAACAAAACTGCCTCAGTTCTTAAGAAACTCAACGCCACACAACCAATTACAGTTTTCAAACAACACAGCCTTCTGGAACGCGTCGGACATGAAAGACGTGAGACCCAGTTATGTTCCGACGTCGTATAACACCATACCCGAGAAATCAAAGAATAGATCCGAGATTGGTGATTCAGTAAGCGTGGGGAAGAAAAGTGGAAACGATGGAAATCAACAACAATCCGGCGGTGGGAAACGGGGACGAAATGAAAGCCCTTCGACATTGCCAGCGTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCCCTGCAACAACTGGTATCACCTTTCGGAAAGACTGATACAGCTTCAGTGCTGTCTGAAGCGATTGAATACATAAAGTTCCTCCATGAACAAGTGGGTGTTTTGAGCACTCCATATTTGAAGAGTAGGAGTGATAAATGGAAGGAAGGCGAAGGAGAGGAAGATCTGAGAAGCCGAGGGCTTTGTTTAGTTCCTGTTTCCAGTACATTTCCTGTCACCCACGACACCACCGTCGATTTTTGGACTCCAACCTTCGGAGGAACCTTCAGATAA 1134 49.74 MAEEFQSSGNWWEASRSRYEAGISPSSSSAAAAADPNLHITGLALDWNQPLLGGGEKAAEGSFRSMLQPDNMNLNMLQETEQQQQIEWMRSEKGINRGFSLDHHHQQFTSPSHYSSTDSAVTTFPIDTTTAATTLYGNSTTLLQGLLGGEQQQVSAAGMNFPYNSHYGINSNDFMAAGASWSPSTKLPQFLRNSTPHNQLQFSNNTAFWNASDMKDVRPSYVPTSYNTIPEKSKNRSEIGDSVSVGKKSGNDGNQQQSGGGKRGRNESPSTLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVGVLSTPYLKSRSDKWKEGEGEEDLRSRGLCLVPVSSTFPVTHDTTVDFWTPTFGGTFR 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5660098 5662123 - CmoCh16G009230.1 Cmo16g00923 399958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00923 377 MobiDBLite consensus disorder prediction 225 272 - -
Cmo16g00923 377 Gene3D - 276 336 IPR036638 GO:0046983
Cmo16g00923 377 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 35 367 - -
Cmo16g00923 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 276 328 IPR036638 GO:0046983
Cmo16g00923 377 SMART finulus 277 321 IPR011598 GO:0046983
Cmo16g00923 377 CDD bHLH_AtbHLH_like 272 323 IPR045239 -
Cmo16g00923 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 315 IPR011598 GO:0046983
Cmo16g00923 377 MobiDBLite consensus disorder prediction 225 265 - -
Cmo16g00923 377 PANTHER TRANSCRIPTION FACTOR BHLH123 35 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00923 - - - cmax:111483288 676.011
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00281 Cmo-Chr7:1377637 Cmo16g00923 Cmo-Chr16:5660098 8.20E-57 dispersed
Cmo07g00463 Cmo-Chr7:2119671 Cmo16g00923 Cmo-Chr16:5660098 4.68E-29 dispersed
Cmo08g00679 Cmo-Chr8:4354532 Cmo16g00923 Cmo-Chr16:5660098 2.85E-26 dispersed
Cmo11g00633 Cmo-Chr11:3033212 Cmo16g00923 Cmo-Chr16:5660098 7.06E-40 dispersed
Cmo12g00398 Cmo-Chr12:2487681 Cmo16g00923 Cmo-Chr16:5660098 1.34E-29 dispersed
Cmo13g00717 Cmo-Chr13:7214808 Cmo16g00923 Cmo-Chr16:5660098 3.41E-46 dispersed
Cmo14g01474 Cmo-Chr14:11917002 Cmo16g00923 Cmo-Chr16:5660098 5.30E-30 dispersed
Cmo16g00923 Cmo-Chr16:5660098 Cmo19g00585 Cmo-Chr19:6601614 3.38E-29 dispersed
Cmo16g00923 Cmo-Chr16:5660098 Cmo04g01049 Cmo-Chr4:5241270 3.58E-31 wgd
Cmo16g00923 Cmo-Chr16:5660098 Cmo04g00999 Cmo-Chr4:5033010 8.86E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g384 . . . . Bpe09g00206 . Bma10g00524 Bma13g00994 Cmo16g00923 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1110 Cone15ag1124 . . . . Blo07g00930 Blo10g00790 Bda05g00748 Bda12g00875 . Bpe03g00813 . . . . . . . Car04g00871 . . Cpe01g00844 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003787 2 3 2 3 2 1 2 1 1 1 1 1 2 2 1 2 1 2 1 1 1 1 1 1 1 1 1 2 3 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00923 Cmo_Chr16 FPKM 2.055449 2.400551 3.162143 3.02281 16.243488 16.082266 16.987309 3.366755 3.484111 3.843056