Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00926 ATGGCTCCTCACATCCAAATCGCATTTTTCTCCATTGCCCTTTTCGCTCTTCTTTCTAATTCCTCTTCTTCACCAACAAAAACCAGCGGCAACACCATCAACAAATGGTGCAATACGACGCCGCATCCTAAGGTTTGCATTTTCTTCATGTCACCCCTCAAATCTCCACCACAAAATCGACTCGAGTTTCGGAAAATGGCGATCAAAACCACATTGGAAGGAGCCGCCAAGGCTCAAAATTACGTGTCCCTATTCGGTCCCACCTGTAAAACCACTCGCCAGAGAGCCGCTTGGACCGATTGCTTCAACCTCTATAACGATACCGTTTTTCAATTAAACCGTACTATCCAATGTCTCGACGGTGGTACTCGCCTCCGGCATTGTACGGATTTCGATGCGCAAACTTGGCTCAGTTCTGCTCTCACTAACATCGATATGTGCAGCTCCGGCGCGGCGGATCTCAATGTCACGGATTTTATTACTCCCATCAAATGTCAGAATGTTTCCAAGATGATTAGCAATTGTTTGGCCATTAATGGGAGATTCTTACAGGAAGAGACCAAAAGCAGAACAACGGGAACAGAGGAATATCAAAATGGGTTTCCGACATGGGTTTCCAGTGGTGATCGGAAATTGTTGCAGTCGGCGAGGGTTAGAGCTCATTTGGTGGTGGCGAAAGATGGGTCTGGCAAATTCCGGACGGTTCAGGCGGCGATCAACGCCGCCGCGAGGAGGCGTGGGAGAAGCCGCTTTGTAATTTACATAAAGCGTGGGGTTTATAAAGAAAACATTGAAGTTGGGAACGATAATGCGAACATAATGCTGGTCGGAGATGGGATTAGATTTACCGTGATTACGAGCGGAAGAAGCGTCGCCGCCGGCTTCACCACCTTCAATTCTGCAACCGCAGGTATCCAAGGTCCAGGGTTCATGGCTCGAGGCATAAGGTTTGTGAACACAGCCGGACCAAGAATGGGGCAAGCAGTGGCACTACGGTCATCATCGGACCTATCGGTGTTCCATCGGTGCAGCTTCGAGGGCTACCAAGACACACTCATGGTGCTGTCACAGAGACAATTCTACAAGCAATGCTACGTATACGGTACAATCGACTTCATTTTTGGGAACGCGGCAGTGGTTCTACAAAACTGCTTGATTTACGTGCGAAGGCCTTTAAAGGGGCAAGTGAACGTGATCACCGCGCAGGGCCGAGAGGACCCATTTCAGAACAGCGGAATCTCGATCCACAACTCGCAAATACGGGCGGCGGCTGATTTGCAGCCCATGATTGGGTCTGTGAAGACGTACTTGGGGCGGCCCTGGAAGAAGTACTCGCGGACCGTCATCATGAGAAGCTATATTGATAGCTTGGTGAGCCCAATGGGTTGGTTGGCGTGGCAAGGTACTAGATTTGCTCAAGATACGTTGTATTATGGGGAGTATCGTAATTTTGGGCCCAGAGCCTCCACCCGGCTTCGAGTCAGATGGCCTGGTTTTCATGCCATTACAACCCGAAATGTGGCCTCTAAGTTCACCGTCCGGAGACTCATCGCCGGCCATACTTGGCTTCCGGCCACTGGAGTTCCCTTCAAGCTTGACCTCTGA 1605 50.16 MAPHIQIAFFSIALFALLSNSSSSPTKTSGNTINKWCNTTPHPKVCIFFMSPLKSPPQNRLEFRKMAIKTTLEGAAKAQNYVSLFGPTCKTTRQRAAWTDCFNLYNDTVFQLNRTIQCLDGGTRLRHCTDFDAQTWLSSALTNIDMCSSGAADLNVTDFITPIKCQNVSKMISNCLAINGRFLQEETKSRTTGTEEYQNGFPTWVSSGDRKLLQSARVRAHLVVAKDGSGKFRTVQAAINAAARRRGRSRFVIYIKRGVYKENIEVGNDNANIMLVGDGIRFTVITSGRSVAAGFTTFNSATAGIQGPGFMARGIRFVNTAGPRMGQAVALRSSSDLSVFHRCSFEGYQDTLMVLSQRQFYKQCYVYGTIDFIFGNAAVVLQNCLIYVRRPLKGQVNVITAQGREDPFQNSGISIHNSQIRAAADLQPMIGSVKTYLGRPWKKYSRTVIMRSYIDSLVSPMGWLAWQGTRFAQDTLYYGEYRNFGPRASTRLRVRWPGFHAITTRNVASKFTVRRLIAGHTWLPATGVPFKLDL 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5729887 5731814 + CmoCh16G009260.1 Cmo16g00926 399961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00926 534 Pfam Pectinesterase 222 519 IPR000070 GO:0030599|GO:0042545
Cmo16g00926 534 ProSitePatterns Pectinesterase signature 1. 247 266 IPR018040 -
Cmo16g00926 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 182 IPR035513 -
Cmo16g00926 534 Pfam Plant invertase/pectin methylesterase inhibitor 32 178 IPR006501 GO:0004857
Cmo16g00926 534 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 179 IPR006501 GO:0004857
Cmo16g00926 534 CDD PMEI-like_3 36 182 - -
Cmo16g00926 534 SMART PMEI_2 28 178 IPR006501 GO:0004857
Cmo16g00926 534 SUPERFAMILY Pectin lyase-like 218 532 IPR011050 -
Cmo16g00926 534 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 59-RELATED 8 532 - -
Cmo16g00926 534 PANTHER PECTINESTERASE 8 532 - -
Cmo16g00926 534 ProSitePatterns Pectinesterase signature 2. 366 375 IPR033131 -
Cmo16g00926 534 Gene3D - 215 534 IPR012334 -
Cmo16g00926 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 182 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g02028 Cmo-Chr14:14842482 Cmo16g00926 Cmo-Chr16:5729887 1.20E-169 dispersed
Cmo16g00926 Cmo-Chr16:5729887 Cmo15g01008 Cmo-Chr15:5577017 7.89E-141 dispersed
Cmo16g00926 Cmo-Chr16:5729887 Cmo04g00349 Cmo-Chr4:1702527 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00926 K01051 - csv:101213944 831.632