Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00930 ATGTCTTATCAAATTTCTCTTGTTTCTGCTTCAACAATTAAGAGTTCAAACACTTTTAAAGGCAAACGCCCTGTCGCAAAATATCATCCGAGCATATGGAAAGACCACTTCCTTTCACTAACATCTGATACATTGAGTATAGATGTTGAGATGGAGGAACAAGCTAAACGGTTGAAAGTAGAAGTAAAAAAGATGTTGATGATTTCTAATAGAAATCTTTTAGAGAAGTTAAGTTTGGTTGATTCAATCCAACGGTTAGGTGTATCTTATCATTTTGAAAATGAGATTGATCAAGTCTTAGAAAAAATATATGCAAACTACAGAGACTTCACAAGTATTGATGGCGACGAGGATCTTCCTACTGTCTCTCTTCTATTTCGATTGCTGAGACAACAAGGTTATAAAATTCCATGCGAAAGTAATGGAAAATTCAAAGAATCACTAGCAAAGGATGCAAGAGGAATATTAAATCTATATGAAGCGGCACATATGAGGGTGCATGGAGAAGATATCCTTGAGGAAGCGCTTGATTTTAGTGTCAAATATCTAAGAGATGTTAGAACGAACTCAAACCCTAAATATGCAGATGAAGTTCAAAGTGCCTTGAAATGGTCACTGAGAAAAACCCTTCCAAGACTAAAGGCAAGAGAGTACATAACAATGTATCAAGAAGATCCTTCCCATTCTCAAACTTTACTTGCGTTTTCAAAACTGGATTTCAGCATACTACAGAAACTTCATCAAAGGGAGTTGAAGGAACTCACAAGGTGGTGGAAGGATTTGGAAGTCCCAACAAACTTTCCTTTTGCTAGAGATAGAATTGTTGAGAGCTACTTTTGGACATTGGGTGCATACTTTGAACCACATTTCAGTGTTGGAAGGAAAATTTTAACCAAAGTAATCGCCCTTTCTTCAATTTTAGATGATATATATGATGCCTACGGAACATTTGAAGAACTCCAAGTTTTCACTACGGCAATCCAAAGGTGGGATAGAAGCATGGTTAACGAGCTCCCAAAATACATGAAACATTTTTATATAGCAATGTTAGATGTTTTCGAAGAAATAAGCAAAGAAATAGGCAAGGATGAAAGTTCACTCCACATAAAAAAGCTAGCTCAATCCTACTTTGAAGAAGCTAAATGGTTGAACAAAAAATACAAACCAAATTTTAATGAGTACATGGAATTGGCGCTATGTAGTACAGGGTATACCTTCATTATAAGCATTTCATTTCTTGGCATGGGTGACATAGTAACGAACGAGGTACTAGAATGGCTTTCTAGAAGACCTAAAATTGTTAAAGCCTCAGCCGTCATTTGTCGACTCATGGACGACGTCGTTTCCCACAAGTTCGAGCAAGAAAGGGAGCATGTTACTTCTGCAGTTGAATGTTACATGGAGCAATATGGTTGTTCAGAGGAAGAAGCTTGTGTTGAACTTCATAAGCAAGTGGTTGATGCATGGAAGGACATAAATGAAGCATGTCTTTATCCAATCGATGTTCCAATGCGTATTCTTATGCGTGTGGTGAATCTTTCTAGAGTTATAAACGTGCTTTATTTGGACGAGGATGGATATACAAATGGAAGTGGTAGAACAAAACTTCTTATTGAATCTCTTCTTGTCAACTCAATACCTTGTTGA 1647 36.85 MSYQISLVSASTIKSSNTFKGKRPVAKYHPSIWKDHFLSLTSDTLSIDVEMEEQAKRLKVEVKKMLMISNRNLLEKLSLVDSIQRLGVSYHFENEIDQVLEKIYANYRDFTSIDGDEDLPTVSLLFRLLRQQGYKIPCESNGKFKESLAKDARGILNLYEAAHMRVHGEDILEEALDFSVKYLRDVRTNSNPKYADEVQSALKWSLRKTLPRLKAREYITMYQEDPSHSQTLLAFSKLDFSILQKLHQRELKELTRWWKDLEVPTNFPFARDRIVESYFWTLGAYFEPHFSVGRKILTKVIALSSILDDIYDAYGTFEELQVFTTAIQRWDRSMVNELPKYMKHFYIAMLDVFEEISKEIGKDESSLHIKKLAQSYFEEAKWLNKKYKPNFNEYMELALCSTGYTFIISISFLGMGDIVTNEVLEWLSRRPKIVKASAVICRLMDDVVSHKFEQEREHVTSAVECYMEQYGCSEEEACVELHKQVVDAWKDINEACLYPIDVPMRILMRVVNLSRVINVLYLDEDGYTNGSGRTKLLIESLLVNSIPC 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5759386 5761945 + CmoCh16G009300.1 Cmo16g00930 399965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00930 548 SFLD Isoprenoid Synthase Type I 230 546 - -
Cmo16g00930 548 PANTHER OS04G0344100 PROTEIN-RELATED 6 528 - -
Cmo16g00930 548 Pfam Terpene synthase family, metal binding domain 233 491 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cmo16g00930 548 Pfam Terpene synthase, N-terminal domain 32 202 IPR001906 GO:0010333|GO:0016829
Cmo16g00930 548 PANTHER TERPENE SYNTHASE 2-RELATED 6 528 - -
Cmo16g00930 548 Gene3D Farnesyl Diphosphate Synthase 30 535 IPR008949 -
Cmo16g00930 548 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 29 228 IPR008930 -
Cmo16g00930 548 SUPERFAMILY Terpenoid synthases 228 547 IPR008949 -
Cmo16g00930 548 SFLD Terpene Cyclase Like 1 C Terminal Domain 230 546 IPR034741 -
Cmo16g00930 548 CDD Terpene_cyclase_plant_C1 23 544 IPR044814 GO:0010333|GO:0016102
Cmo16g00930 548 Gene3D - 71 228 IPR036965 GO:0010333|GO:0016829
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00930 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K14183 csv:101211452 727.243
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00729 Cmo-Chr6:3739789 Cmo16g00930 Cmo-Chr16:5759386 3.56E-165 dispersed
Cmo16g00878 Cmo-Chr16:4715424 Cmo16g00930 Cmo-Chr16:5759386 8.37E-36 dispersed
Cmo16g00882 Cmo-Chr16:4778259 Cmo16g00930 Cmo-Chr16:5759386 0 dispersed
Cmo16g00884 Cmo-Chr16:4802118 Cmo16g00930 Cmo-Chr16:5759386 1.12E-58 dispersed
Cmo16g00887 Cmo-Chr16:4869479 Cmo16g00930 Cmo-Chr16:5759386 0 dispersed
Cmo16g00888 Cmo-Chr16:4871321 Cmo16g00930 Cmo-Chr16:5759386 2.76E-79 dispersed
Cmo16g00930 Cmo-Chr16:5759386 Cmo20g01126 Cmo-Chr20:10780941 3.43E-95 dispersed
Cmo16g01050 Cmo-Chr16:7347610 Cmo16g00930 Cmo-Chr16:5759386 6.03E-73 dispersed
Cmo16g00930 Cmo-Chr16:5759386 Cmo16g00886 Cmo-Chr16:4856735 3.41E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g396 . . . . . . . . Cmo16g00930 . . . . . . . . . . . . . . . Cla10g00589 Cam10g0577 Cec10g0608 Cco10g0584 Clacu10g0608 Cmu10g1421 Cre10g0823 . . . . . Csa03g00578 . Cme06g02696 . . . . . . . . . . . . . . . . . Bhi11g00695 Tan01g1629 . . Hepe07g1115 . . . . . . . . . Lsi05g00662 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00930 Cmo_Chr16 FPKM 9.076939 10.226518 9.548345 9.884191 6.715651 6.09795 7.670156 18.47209 18.006739 18.35211