Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00944 ATGAGAAGAGGGAGAGGGGCGGCGACGGCGACGGCTGCGGCGCGTGAGGCAGCACCTCCCGGATCGGAGAGGAGATACAGAGGAGTTCGAAAGCGGCCATGGGGTAGATTCGCGGCGGAGATCAGAGACCCTTGGAAGAAGACCAGAGTATGGCTAGGCACCTTCGATTCCGCCGAGGACGCCGCCCGTGCTTACGACAACGCCGCTATAACCCTCCGTGGACCTAAAGCTAAAACCAACTTCCCTCTCGCTAATCCAATCTCGTTTTTCGATTACCCTCCTTATCCTCACCCTCACCCGCACCCTCATCCCGTCAACGCTCCAGATCCCTTCCTCGATCCTCGATTTCAGATTAATAACCCTCACAGACCTACTTCCAGCAGTTTGAGCTCTACCGTCGAATCCTTCAGTGGGCCCCACCCTCCTTCTGCCGCTGCTACAACCGCTTCTCCCTCTCGCCGTTACCCACGCACGCCGCCTCTCCTCCCTGAGGATTGTCATAGCGACTGCGATTCCTCCTCCTCCGTCATCGACGACGGAGACGACATCGCTTCCTCCTCCATGATCCCTCGGAAACCCCCTCTGCCGTTCGATCTGAACATTCCACCCTCCGAACTTCTTGATTTGGCCGCCGATGATCTTGGATGTACCGCCTTGTGCCTCTGA 666 57.96 MRRGRGAATATAAAREAAPPGSERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLANPISFFDYPPYPHPHPHPHPVNAPDPFLDPRFQINNPHRPTSSSLSSTVESFSGPHPPSAAATTASPSRRYPRTPPLLPEDCHSDCDSSSSVIDDGDDIASSSMIPRKPPLPFDLNIPPSELLDLAADDLGCTALCL 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6074249 6074914 + CmoCh16G009440.1 Cmo16g00944 399979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00944 221 MobiDBLite consensus disorder prediction 119 154 - -
Cmo16g00944 221 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Cmo16g00944 221 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 199 - -
Cmo16g00944 221 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Cmo16g00944 221 MobiDBLite consensus disorder prediction 100 196 - -
Cmo16g00944 221 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Cmo16g00944 221 Gene3D AP2/ERF domain 24 84 IPR036955 GO:0003700|GO:0006355
Cmo16g00944 221 MobiDBLite consensus disorder prediction 1 27 - -
Cmo16g00944 221 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Cmo16g00944 221 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Cmo16g00944 221 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Cmo16g00944 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED 1 199 - -
Cmo16g00944 221 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g02018 Cmo-Chr11:13773470 Cmo16g00944 Cmo-Chr16:6074249 2.62E-43 dispersed
Cmo16g00944 Cmo-Chr16:6074249 Cmo20g00258 Cmo-Chr20:1266321 1.12E-48 dispersed
Cmo16g00944 Cmo-Chr16:6074249 Cmo06g00895 Cmo-Chr6:5287711 2.25E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11313 PF00847 AP2 5.20E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00944 K09286 - csv:101219993 273.478