Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00949 ATGGCGAGCGAGACCGAGCCGGCGAAGCTCCTTCTGCCCTACCTCCAGCGAGCGGACGAATTGCAGAAGCACGAACCTCTTGTCGCATATTACTGTCGATTATATGCTATGGAACGTGGGCTAAGGATTCCACAGGGCGAACGTACGAAGACCACGAATGCCCTCCTTGTTTCCCTCATGAATCAGCTCGAAAAGGATAAGAAGTCACTCAACCTTGGGCCTGATGATAGTTTGCATCTAGAGGGGTTTGCATTGGGTGTCTTTGCAAAGGCAGACAAACAAGATCATGCTGGACGAGCAGATTTGAACACTGCAAAAACATTTTATGCTGCAAGCATTTTCTTCGAGATTATTTCCCAGTTTGGTCCACTTCAACCAGACCTGGAGCAAAAACGGAAATACGCCGTCTGGAAAGCAGCAGATATCAGGAAGGCTTTGAAAGAGGGAAGGAAGCCACAGCCTGGTCCACCTTCTGGTGATGAAGATCTGTCTGTTCCTTCAAGTACACCTACCAGTGCAAATGATGCAAGACCAGGAGAGCCTCAAGTCTCGAGAACTCGATCACAATCGGATTCCTTACCCCAGGTTTATGATAAGGTTAATGATGATCATTCAAATGTCCCACAAACTCCTCAGGTCTATGACAACATGAACAACCACACTTCTTTAAACACTTCTCCGCCTGCTCGATTCCATAATGACGTCAACAATCAGCACCCTTCAAATATTCCATCATACCCTGCTGCTGATTATCCATCCCATGAGTTTCATCTACCTCCTCCGAGGAATGAACCTGACAACAGTTCCTCTTACTCTCAGCCATACCACCACATCCAATCCTACTCAGAGCATCAACAGCCTTTGCCTCATAATTATGTATCTAATGAAACCTCCCCAAATTACTCATATTCCCATTTCCAATCTTATCCAAGTTTCTCGGAAACTAGCCTCCCGACCGCCCCTTCTCACCATCCGACCTATTACCAAGGATCCGATGCTTCATACTCTTCTCACGTGACTCCTCCTGCCAGCTACCCATCAGCTTCCCAATATCATTCAAACGGTAGAGAGGGGACGGCCTCAGAACCTCAACCTACAGCAGCTCCAGCCAAGTCGTTCCATTATGACAGCAACTACCAGCCACCTCCTGAGAAAATTGCTGAGGCACACAAGGCTGCGAGGTTTGCAGTAGGGGCTCTGGCATTTGATGATGTTTCAGTTGCAGTAGAACACTTGAAGAAATCACTGGAATTGTTGACTAACCCTTCAGCCGGTCTGTGA 1281 47.54 MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNALLVSLMNQLEKDKKSLNLGPDDSLHLEGFALGVFAKADKQDHAGRADLNTAKTFYAASIFFEIISQFGPLQPDLEQKRKYAVWKAADIRKALKEGRKPQPGPPSGDEDLSVPSSTPTSANDARPGEPQVSRTRSQSDSLPQVYDKVNDDHSNVPQTPQVYDNMNNHTSLNTSPPARFHNDVNNQHPSNIPSYPAADYPSHEFHLPPPRNEPDNSSSYSQPYHHIQSYSEHQQPLPHNYVSNETSPNYSYSHFQSYPSFSETSLPTAPSHHPTYYQGSDASYSSHVTPPASYPSASQYHSNGREGTASEPQPTAAPAKSFHYDSNYQPPPEKIAEAHKAARFAVGALAFDDVSVAVEHLKKSLELLTNPSAGL 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6179070 6187588 + CmoCh16G009490.1 Cmo16g00949 399984

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00949 426 Pfam Vta1 C-terminal domain 383 420 IPR041212 -
Cmo16g00949 426 Gene3D Immunoglobulin FC, subunit C 383 421 - -
Cmo16g00949 426 MobiDBLite consensus disorder prediction 146 296 - -
Cmo16g00949 426 MobiDBLite consensus disorder prediction 263 296 - -
Cmo16g00949 426 MobiDBLite consensus disorder prediction 312 383 - -
Cmo16g00949 426 MobiDBLite consensus disorder prediction 202 244 - -
Cmo16g00949 426 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 1 424 IPR044538 GO:0032511
Cmo16g00949 426 Pfam Vta1 like 13 148 IPR039431 -
Cmo16g00949 426 Gene3D - 3 152 IPR023175 -
Cmo16g00949 426 MobiDBLite consensus disorder prediction 312 361 - -
Cmo16g00949 426 MobiDBLite consensus disorder prediction 162 196 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00949 K12199 VTA1, LIP5; vacuolar protein sorting-associated protein VTA1 - csv:101217617 781.171
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00890 Cmo16g00949 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00949 Cmo-Chr16:6179070 Cmo02g00631 Cmo-Chr2:3918920 3.61E-07 dispersed
Cmo16g00949 Cmo-Chr16:6179070 Cmo06g00890 Cmo-Chr6:5211609 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g577 . . . . Bpe09g00150 . Bma10g00579 Bma13g01092 Cmo16g00949 Cmo06g00890 . . . . . . . . . . . . . . Cla10g00471 Cam10g0459 Cec10g0480 Cco10g0468 Clacu10g0478 Cmu10g1307 Cre10g0712 . . Cone14ag1181 Cone15ag1198 . Csa03g00473 . Cme06g02835 Blo07g00882 Blo10g00850 Bda05g00695 Bda12g00936 . Bpe03g00771 . . Sed08g2974 . . . Cma16g00914 . Car16g00887 Cpe14g00739 . Bhi11g00573 Tan01g1750 Cmetu06g1656 . . . . . . . . . . . Lsi05g00561 . Chy06g01849 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004471 2 1 2 3 2 1 2 1 0 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00949 Cmo_Chr16 FPKM 45.806988 47.502857 53.620636 51.030968 52.024391 51.799137 52.113155 58.176392 60.471798 57.708801