Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00950 ATGGCCGAACCCATGGAGGAAACCACGGTTGTTGATGGCGAACCCACTCTACCCACCGGCGAGAAGAGGTCAATTGAGATTCACGGGGACGATGAACTTGCGGAGCCTCAGTTGAGAAAGAAGCCCCGTAATGGTTGCGAGTTGGGTCCTAATCTCCGGAGGGTTGCGGAGATTGTGTTGGTCATGTCCACAATGACGGCGCTGCGTGCTGGAAAGAAGCCTACTGATGCCGAGGTTGAATTAATGGCTGAGGCTAGGGCTAAGTTGGTTCAGATTTGTGAAGGATTGGCTCCCAAGGATATTGTGGGAAGGGAAGGAATTAGTTCTTTGATTGAAGATTTGGGGCTGCATGGTAACATTAGGGATCAGAAGTTAGGGTTTCGCGGTCCCAGGTTGACGATAGCGGAGAAATTAGCGCAGACAAAGAAGAAGATGGAAGATTCCAAGAAATATATCCCACCTTCGGGTTATGGATCTCATCCAACCCAAAAACATATTATTTCATCGATTGAGAACCGTGGGCCATTGCCTTCTGTACGGATGTTTCCCTCAGACAAATCAAGTCCTGTCCCTAATTCAGTGGGAGGCACTGCCGGTACTCTGCCTTCAGGTCATGTTTCTGTTGCTGGTTCTACGTCCATGCAGGTTCAACCGCAACTAACAGGCAATGAAGTCAGAGCTCATAATATTTCAAGTGGATTTCCAATTAATCAACAAGGAAGGGACCCTTCCTCACTCTTGCATGGCATTGAAAGACCACTAAATGGGACATATGGATCTCAAATGCAAGTTAACTCTTCCGTAAATCACTCTCTGGCGAGTGCTCCTACCTGGTCTGCTCAAACTCAATCTGCCTTGTCGGCTAAAGGTGGGCCAGAACACAAGTTTCCAAATCATTCTGCTGCTAATGCTCAGGGAACCACAGATTCAAGAGCCTTAAGATCGTCTTCTCAAGCAGCAAGGGACCAAAGCTTTAGACCTCCAATTCCTCAAACTGGGACAGGAAATATGGCTGGTTTGCAGCCGCATTTACAGAGCATAAATTTTGTGCAAGGGCCTTCAGTTTCTAATAGCCACAATGAAATTGTCAAAATTATTCAGAAGCTGTTACAGCCACAGCTTCCTGATCATCCTACTTGGAATCCTCCTTCAAGAGATTACATGAACAAGGCTGTGACTTGCCAAACTTGTCAAGTTACCATCAATGAGATTGATAGTGTACTTATATGTGATGCTTGTGAGAAAGGATTTCACTTGAAATGTGTACAGTCACCTAATCAGAGAGCGATTCCTAGGGGGGAGTGGCACTGCCCAAGATGCTTAACTATAAGCAATGGGAAGCCTTTACCTCCTAAATACGGGCGTGTCATGAGGAGTAACCCCCCACCAAAATTATCTGTCAATACCAGTGGATCTCAGCCACCAGAGAAGAGTTTAGGAGCCGCTGTGGAACAAAAGGCCAGTGCTGGACAGCTGAAGTTAGTTTCTAATGGAGGTTTAGATTTGCTAAGTCACCACCAGCCTGCTGAGGATGGAAGCAATGCCAATGAATCATCTGGTATCAAAATTCCAAATGCGGAAGAAGCTCATGGAAATAATCTTTTACCAATTAGGAAAGACATAGATGAGAAACCAACCTCTTCGACTTCCCTGAATACCCCAGCCAAATCCTTGGGGATGGTTTGTGAACCCTCTTCTGCTGAGATATCAAGTGAAGTATCTGCTCAGCACATTAAAAGTTCTCAAGCACCAATAGGTGAAGATGGATCCTCAGCAAAATCAGAGCCTCCTGAAGAATCTCAAACTGCGGGTGACAATTCTAGTAACCCTAAACCCCCTGACATTCCTCAAATTGTTGATCAGCAAATGGGTTCTAATGGTCCAGAGGAACCTTACTCAACAGCAAGTTCTCATGACACTTCAAATGTGAAGAAAGATGGCCATGAAGTTCTGCAGGAGAATAATGTTGAAAATTTTGAAGCTAGCATCATAAATAGAGAGCAGTCCGGGACTTCTTCCAATGACCTGCATGATGTTGAATGGATTGGCGACCCACATCAGCTGACAGATACGAGGGCATATTACAAATCCTGTCGTGTTGATGGGGTTACATATATAGTTGAAGAGTTTTCTCTTTTTCACTCCAACAACGGGAAACTGATGCCCTATAGGCTTCAGTCCTTGTACCATGAATATGAAAGTGGATTGAACTGGGCTATTCTTAAGCAGTGTTACTTTCATGAGGACTTGCCCAAGGAAGTTGCCCACCTCTGCCCGTGCTCCCCTGAACAAAATGAGGTACACTTTTCATCTCCTTTTATTTCTCTAATTTCTCCATTTTCCTTGTATGAGATTCTTCATTCATATATGTTCTTGCACACACCTCTAGAAGTTATACTCAGATCTCACGTATATACATCCGATGGCAACATTTGTTTAGCTGTGGGCTTAATTCGAAGCCCATGTGAAGTTCTTCCTGTTGCCAAGTATAAAGAAGAACATGAAAGACGAAAACAATTGGGTCCTGGGGCAGATGATGGAATAAAGCCAACTTTCCTGTGCAAATGGTTTTATACTGAAGCTAACAAAGAATTTGTACCTTTTACTGATGCCGTATGTGAAAGCTTCTCAGTGATGCAGCACCTGCCCTCTGCTTTCACAATGAAGGAGTTGAGTGAAGCAAAAGATGGTGAATGCCAC 2700 44.52 MAEPMEETTVVDGEPTLPTGEKRSIEIHGDDELAEPQLRKKPRNGCELGPNLRRVAEIVLVMSTMTALRAGKKPTDAEVELMAEARAKLVQICEGLAPKDIVGREGISSLIEDLGLHGNIRDQKLGFRGPRLTIAEKLAQTKKKMEDSKKYIPPSGYGSHPTQKHIISSIENRGPLPSVRMFPSDKSSPVPNSVGGTAGTLPSGHVSVAGSTSMQVQPQLTGNEVRAHNISSGFPINQQGRDPSSLLHGIERPLNGTYGSQMQVNSSVNHSLASAPTWSAQTQSALSAKGGPEHKFPNHSAANAQGTTDSRALRSSSQAARDQSFRPPIPQTGTGNMAGLQPHLQSINFVQGPSVSNSHNEIVKIIQKLLQPQLPDHPTWNPPSRDYMNKAVTCQTCQVTINEIDSVLICDACEKGFHLKCVQSPNQRAIPRGEWHCPRCLTISNGKPLPPKYGRVMRSNPPPKLSVNTSGSQPPEKSLGAAVEQKASAGQLKLVSNGGLDLLSHHQPAEDGSNANESSGIKIPNAEEAHGNNLLPIRKDIDEKPTSSTSLNTPAKSLGMVCEPSSAEISSEVSAQHIKSSQAPIGEDGSSAKSEPPEESQTAGDNSSNPKPPDIPQIVDQQMGSNGPEEPYSTASSHDTSNVKKDGHEVLQENNVENFEASIINREQSGTSSNDLHDVEWIGDPHQLTDTRAYYKSCRVDGVTYIVEEFSLFHSNNGKLMPYRLQSLYHEYESGLNWAILKQCYFHEDLPKEVAHLCPCSPEQNEVHFSSPFISLISPFSLYEILHSYMFLHTPLEVILRSHVYTSDGNICLAVGLIRSPCEVLPVAKYKEEHERRKQLGPGADDGIKPTFLCKWFYTEANKEFVPFTDAVCESFSVMQHLPSAFTMKELSEAKDGECH 900
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6191990 6202619 + CmoCh16G009500.1 Cmo16g00950 399985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00950 900 MobiDBLite consensus disorder prediction 173 214 - -
Cmo16g00950 900 SMART PHD_3 393 441 IPR001965 -
Cmo16g00950 900 MobiDBLite consensus disorder prediction 451 485 - -
Cmo16g00950 900 MobiDBLite consensus disorder prediction 567 588 - -
Cmo16g00950 900 ProSiteProfiles BAH domain profile. 703 869 IPR001025 GO:0003682
Cmo16g00950 900 MobiDBLite consensus disorder prediction 595 640 - -
Cmo16g00950 900 MobiDBLite consensus disorder prediction 256 288 - -
Cmo16g00950 900 MobiDBLite consensus disorder prediction 462 476 - -
Cmo16g00950 900 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 455 IPR013083 -
Cmo16g00950 900 Pfam PHD-finger 394 441 IPR019787 -
Cmo16g00950 900 SUPERFAMILY FYVE/PHD zinc finger 384 450 IPR011011 -
Cmo16g00950 900 ProSiteProfiles Zinc finger PHD-type profile. 391 443 IPR019787 -
Cmo16g00950 900 MobiDBLite consensus disorder prediction 300 334 - -
Cmo16g00950 900 Gene3D - 684 897 IPR043151 -
Cmo16g00950 900 MobiDBLite consensus disorder prediction 19 34 - -
Cmo16g00950 900 MobiDBLite consensus disorder prediction 185 214 - -
Cmo16g00950 900 ProSitePatterns Zinc finger PHD-type signature. 394 440 IPR019786 -
Cmo16g00950 900 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 8 869 - -
Cmo16g00950 900 MobiDBLite consensus disorder prediction 502 643 - -
Cmo16g00950 900 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 8 869 - -
Cmo16g00950 900 MobiDBLite consensus disorder prediction 1 34 - -
Cmo16g00950 900 MobiDBLite consensus disorder prediction 232 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00950 - - - csv:101222588 1350.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00950 Cmo-Chr16:6191990 Cmo14g00653 Cmo-Chr14:3295030 2.40E-06 dispersed
Cmo16g00950 Cmo-Chr16:6191990 Cmo20g01075 Cmo-Chr20:9949118 1.07E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g580 . . . . . . . . Cmo16g00950 . . . . . . . . . . . . . . . Cla10g00470 Cam10g0457 Cec10g0479 Cco10g0466 Clacu10g0477 Cmu10g1306 Cre10g0711 . . Cone14ag1182 Cone15ag1199 . Csa03g00472 . Cme06g02834 . Blo10g00851 . Bda12g00937 . . . . Sed08g2972 . . . . . . . . Bhi11g00572 Tan01g1753 Cmetu06g0787 . Hepe06g0022 Mch10g1340 . . . . . . . . Lsi05g00560 . Chy06g01850 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008595 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11314 PF00628 PHD 3.10E-08 CL0390 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00950 Cmo_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0