Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00959 ATGGAGTTTCTTCCATTCCCTTCCCTGGACCTTCTACGAAGAACATCCAACGTCGACCACGGGAATTTGACTCCCTCTCCCGCCGTGGTCAATACGACGTTGGTGATGGCTTCTTCTGATTTATGGTTAAAGGAATATAATGAAGCCTCTAAGCTTGGGGATGATATCAATGGCATGATTTCTGAAAGAAGTTCCGTTCCTGCAACTGGACCAGAAGCTCAACGTCATGCCTCCGCGATTCGGAGGAAGATCACGATTTTGGGGACTAAAGTTGATGGCTTAGAGTCCCTTTTGTTGAAGCTTCCTGTAAAGCAGCCCCTATCAAAAGTAAACCAGATGGCCTCAACGCTGAACATGTCAAACTTCGCTAACCGCAACAGTTTGCTTGGCCCTGATATGAAATCAGCGGATGTAATGAGCAAAACAGCTGAACTAGACAACCAAGGACTTGTTGAGCAAGATGAAGGTCTTGAAAAGTTGGAGGAGACCATAAGAAGTACAAAACATATTGCTTTGGCAGTTAATGAAGAACTCGATCTTCATACTCGCCTAATTGATGACTTAGACCAGCATGTCGATGTTACAGACTCTCGATTAGCGATATCTCTAGGATGTAGGGCTAATTCATCACTAGTTGAAATAGATATGAGGGTGCAGAAGAGATTAGGAATATTGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTGGGAATGCTTCTGTCTGTGGTAGGTATTGTGGGTTTAATTGCTGTCATATGGCTACTCATTCGATACTTGTAA 780 44.1 MEFLPFPSLDLLRRTSNVDHGNLTPSPAVVNTTLVMASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASAIRRKITILGTKVDGLESLLLKLPVKQPLSKVNQMASTLNMSNFANRNSLLGPDMKSADVMSKTAELDNQGLVEQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLAISLGCRANSSLVEIDMRVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVIWLLIRYL 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6354364 6357619 - CmoCh16G009590.1 Cmo16g00959 399994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00959 259 PANTHER SYNTAXIN 36 254 IPR045242 -
Cmo16g00959 259 SUPERFAMILY SNARE fusion complex 146 200 - -
Cmo16g00959 259 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 147 199 IPR000727 -
Cmo16g00959 259 CDD SNARE_Qc 152 199 - -
Cmo16g00959 259 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 36 254 - -
Cmo16g00959 259 Coils Coil 157 177 - -
Cmo16g00959 259 Gene3D - 149 203 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo09g00974 Cmo16g00959 CCT
Cmo01g01156 Cmo16g00959 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00974 Cmo-Chr9:5158698 Cmo16g00959 Cmo-Chr16:6354364 4.92E-94 dispersed
Cmo16g00959 Cmo-Chr16:6354364 Cmo01g01156 Cmo-Chr1:9455895 3.07E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00959 K08503 - csv:101223140 345.895