Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g00959 | ATGGAGTTTCTTCCATTCCCTTCCCTGGACCTTCTACGAAGAACATCCAACGTCGACCACGGGAATTTGACTCCCTCTCCCGCCGTGGTCAATACGACGTTGGTGATGGCTTCTTCTGATTTATGGTTAAAGGAATATAATGAAGCCTCTAAGCTTGGGGATGATATCAATGGCATGATTTCTGAAAGAAGTTCCGTTCCTGCAACTGGACCAGAAGCTCAACGTCATGCCTCCGCGATTCGGAGGAAGATCACGATTTTGGGGACTAAAGTTGATGGCTTAGAGTCCCTTTTGTTGAAGCTTCCTGTAAAGCAGCCCCTATCAAAAGTAAACCAGATGGCCTCAACGCTGAACATGTCAAACTTCGCTAACCGCAACAGTTTGCTTGGCCCTGATATGAAATCAGCGGATGTAATGAGCAAAACAGCTGAACTAGACAACCAAGGACTTGTTGAGCAAGATGAAGGTCTTGAAAAGTTGGAGGAGACCATAAGAAGTACAAAACATATTGCTTTGGCAGTTAATGAAGAACTCGATCTTCATACTCGCCTAATTGATGACTTAGACCAGCATGTCGATGTTACAGACTCTCGATTAGCGATATCTCTAGGATGTAGGGCTAATTCATCACTAGTTGAAATAGATATGAGGGTGCAGAAGAGATTAGGAATATTGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTGGGAATGCTTCTGTCTGTGGTAGGTATTGTGGGTTTAATTGCTGTCATATGGCTACTCATTCGATACTTGTAA | 780 | 44.1 | MEFLPFPSLDLLRRTSNVDHGNLTPSPAVVNTTLVMASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASAIRRKITILGTKVDGLESLLLKLPVKQPLSKVNQMASTLNMSNFANRNSLLGPDMKSADVMSKTAELDNQGLVEQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLAISLGCRANSSLVEIDMRVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVIWLLIRYL | 259 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 6354364 | 6357619 | - | CmoCh16G009590.1 | Cmo16g00959 | 399994 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g00959 | 259 | PANTHER | SYNTAXIN | 36 | 254 | IPR045242 | - | |
Cmo16g00959 | 259 | SUPERFAMILY | SNARE fusion complex | 146 | 200 | - | - | |
Cmo16g00959 | 259 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 147 | 199 | IPR000727 | - | |
Cmo16g00959 | 259 | CDD | SNARE_Qc | 152 | 199 | - | - | |
Cmo16g00959 | 259 | PANTHER | TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED | 36 | 254 | - | - | |
Cmo16g00959 | 259 | Coils | Coil | 157 | 177 | - | - | |
Cmo16g00959 | 259 | Gene3D | - | 149 | 203 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo09g00974 | Cmo16g00959 | CCT | |
Cmo01g01156 | Cmo16g00959 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo09g00974 | Cmo-Chr9:5158698 | Cmo16g00959 | Cmo-Chr16:6354364 | 4.92E-94 | dispersed | |
Cmo16g00959 | Cmo-Chr16:6354364 | Cmo01g01156 | Cmo-Chr1:9455895 | 3.07E-95 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g00959 | K08503 | - | csv:101223140 | 345.895 |