Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00975 ATGTCTCTACAAAGCTATGTTGCACTCGAACGCCCTCGTTTTGTCGATCGAAAGCTCCTTGCTCGACCTCAACATGAAGGCTTCGGCGCTGTCGTAAGAAGAAGCATCGGCAGGTATGAACTCAAATACTTTGATCCATTCCTTGTTCTAGACGAGTTCTTTGTGACTCCACCAGCTGGTTTTCCTGATCATCCACATCGAGGATTTGAAACTGTCACCTACATGCTGCAGGGAGCAATGACACACGAAGATTTTCAAGGCCATAAAGGAACAATTGGAGCTGGCGACTTGCAATGGATGACTGCTGGCAAAGGCATTGTCCACTCTGAAATGCCTGCCTCCCATGGCACTCAACATGGCTTACAACTTTGGATCAATCTCTCCTCCAAACACAAAATGATAGAGCCGAGGTATCAAGAAGTACATAACAACGACGTAGTAGAAGCTAAAAAAGACGGAGTAAAAGTGAGAGTGATAGCGGGAGAAGCCATGGGAAAACGATCCCCAATTTACACCAAGACTCCGACCATGTACTTGGATTTCACACTAGACCCAGGATCTCACATCGAGCAGCCGATCCCAGTGGGATGGAACGCGTTCGTGTACGTGCTAGAAGGCGAGGACGGAGTGTTCGGGAGCGTGAAATCGATGCCGATTGCATCACATCACATTCTTTTGTTAGGGAGTGGGGATGGATTGGAGGCTTGGAACAAGTCTTCCTCTGAAGCCCTAAGGTTTATATTGGTTGGGGGTGAGCCATTGAATGAGAGTGTTGTGCAGATGGGGCCATTTGTGATGAACACTGAAGAAGAGATTGACCAAACCATTGAGGATTTTGAGAATGGTACCAATGGGTTTGAGAGAGCAAAGCATTGGAGTTCACAAGCTTAA 891 47.14 MSLQSYVALERPRFVDRKLLARPQHEGFGAVVRRSIGRYELKYFDPFLVLDEFFVTPPAGFPDHPHRGFETVTYMLQGAMTHEDFQGHKGTIGAGDLQWMTAGKGIVHSEMPASHGTQHGLQLWINLSSKHKMIEPRYQEVHNNDVVEAKKDGVKVRVIAGEAMGKRSPIYTKTPTMYLDFTLDPGSHIEQPIPVGWNAFVYVLEGEDGVFGSVKSMPIASHHILLLGSGDGLEAWNKSSSEALRFILVGGEPLNESVVQMGPFVMNTEEEIDQTIEDFENGTNGFERAKHWSSQA 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6636999 6638446 + CmoCh16G009750.1 Cmo16g00975 400010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00975 296 PIRSF Pirin 11 293 IPR012093 -
Cmo16g00975 296 Gene3D Jelly Rolls 26 280 IPR014710 -
Cmo16g00975 296 SUPERFAMILY RmlC-like cupins 14 294 IPR011051 -
Cmo16g00975 296 CDD cupin_pirin_C 175 253 - -
Cmo16g00975 296 Pfam Pirin 32 125 IPR003829 -
Cmo16g00975 296 CDD cupin_pirin_N 30 127 - -
Cmo16g00975 296 Pfam Pirin C-terminal cupin domain 178 285 IPR008778 -
Cmo16g00975 296 PANTHER PIRIN-RELATED 6 296 IPR012093 -
Cmo16g00975 296 Gene3D Jelly Rolls 147 254 IPR014710 -
Cmo16g00975 296 PANTHER - 6 296 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo09g00982 Cmo16g00975 CCT
Cmo01g01145 Cmo16g00975 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01145 Cmo-Chr1:9388579 Cmo16g00975 Cmo-Chr16:6636999 4.30E-167 dispersed
Cmo06g01619 Cmo-Chr6:11308243 Cmo16g00975 Cmo-Chr16:6636999 1.68E-143 dispersed
Cmo14g01545 Cmo-Chr14:12339913 Cmo16g00975 Cmo-Chr16:6636999 1.54E-16 dispersed
Cmo16g00975 Cmo-Chr16:6636999 Cmo09g00982 Cmo-Chr9:5209836 2.49E-161 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00975 K06911 - csv:101204082 492.656