Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00977 TCAGAAACAATGAAGTCGAATACAGCAGAATCAATGGAGACTGGTTTCTTGGGAAGCATATCTGCCTCTTCCTTCCGAAACCTCCTTCCTCGATCCATCTCTTCTAAGAAAAAACTAATTTCCTCCTTTTCTAAGAAGCTTCCGCATTCAAATTCTGAAAATATGCCTCCTATTGATCCGAACATTCCTGTCAAGGACGACCGGATTTCCACGACCATTTCCAAGTCCGGTGTCCGGAATTCTCCTCACGATGCTTTGCCTCCAGATTCCAATCTTGATCTGAAGGTATGCGATGAAGTTGTCCAATCAGACGGCCAGTATGAAGTTCCTACCCCTACTTATCAGCCGATTAAGGTTGTCGTGAGAATTAGACCTAATGATAGAGAGAAGGAAATGGACAGGACGGTGAAGAAGATTTCTTCAGATGAATTGACATTTCAGGACCAAATTATTAATTTCGGATCTAAGGAAAGAAATCTGTTTGAAGAAGATATCTTTTCGAAGATCGGAATTCCGCTAGTGAAAGATGCGTTAGCTGGTTATAACACTTCCATCATGTCATATGGTCAGACGGGAAGTGGTAAAACATTCACAATGTGGGGTCCCCCGAGTGCCATGGTTGAGGATCCTTCACCCTTTAGTAACCAAGGCCTTGCTCCTCGCATCTTTCAAATGCTGTTTTCAGAGATTCAAAAAGAACAAGAGAACTCTGAAGGAAAACTGATAAATTACCAGTGTCGTTGTTCTTTTGTTGAGATATTTAATGAACAAATTGGGGATTTGCTTGATCCTTCCCAGAGAAACCTTAAGATTAAGGATGATGCAAAGAATGGACTGTATGTGGAAAATGTCACAGAGGAATATGTGACAAGCTACGATGATGTAACTCAGATTCTTATCAAGGGACTTTCAAGTAGAAAAGTCGGAGCTACCACTATAAATTCTAAGAGCTCTAGGTCTCATATTGTGTTTACTTTCATCATTGAGTCATGGTGCAAGGAAACTTCATCCAAGTGTTTTGGTAGTTCAAAGACGAGCAGAATCAACCTTGTTGATCTTGCTGGATTAGAAAGGAATGTAAGCGATGCCATGGGTAGACAATCCACAAGGGAAGACAAGATTTTGAAGAAGTCTATGTCACGGCTCGGGCACTTGATCGATTCACTAGCTAAAGAAACTGAATTAAGAACATCTGAAGAGCGTTTGTACAGAAGCTCCTGCTTGACCCATTTATTAAGAGAGTCATTTGGTGGCAACGCCAAGCTCACAGTTATTTGTGCTATCTCTCCAGATAACAGCTTTTCAGGTGAAACGTTAAGGACATTGAGATTCGGACAACGATTGAAATCAGTTCAGAATCGACCAGTCATAAATGAAATAAAGGAAGATGACGTAAATGATCTGAGTGATCAAATTCGTCAATTAAAGGAAGAACTTATAAGAGCAAATACCAACTCAGGAAAGTCAGTTCCAAAAACTGGCTACTTTCAAGGGCCTAATGTACGAGACAGCCTGAATCATTTAAGAGTTAATATCAATCGCTCTCTGATTTTGCCAAGCATTGATAATGACTCAGACGAAGAGGTTAATTGTAACGAGGAAGATGTGATGGAATTGCATCAGCAACTGGATAAGGTCCATAGCTTTTCTGAAGATAGCTCTGATAATAGAGATTCACTTCAGTTCTCCTCCGTAGAAGAAAGTTTTGCTTCATGTTCAATGAGTGATGATGAAGTAAGTTATCCCCAAACAATTGAAGAAATAAACCCAGAAGAAATTTTTCATGATTCCAAGGTTCCTGAACCTGTGAACAATCAGAGGAGTATTTCTGTCAGCTCAATATGTCACTTCCCTAATCTTGAAGATCCACCATTGTCTGAGTCTCCGAAAATTGGAAATTCTCAAAGGAAAAGTTTGGTCGTTGCACCTAGTTTCGCTGACCACCATGAAAAGATGTCAGACAGCTTTAAGTTTAATAAAGATGTACTGAGGCAGTCATTGAGTCAGAGTAAGAACATCAGATCCTCCCTGCGATCGAGTAATACATTTGAAGATCCTACTGAGTCATTGGCAGCTAGTCTTCAAAGAGGTTTGAAGATAATTGATTATCACCAGCAAAGCTCAGCATTAAACAAATCTTCAGTATCCTTTTCCTTTGAACATCTGGCACGAAAATCATGTCCAGAAGTCAACAAACCTGTACCATCTCTTCAAACATTGGAAGAAGATAACCCCATCGCTATATCTTCTCCCCATCAGCTTTGTTCATCTTGTCAAAGAAGAATCACCAAGAATGACAATAGTTTAGTCCTGAGTAGCTCCAAGGAACTCGTAGGATTCAACGAGGGAAGGGATCTTGCGAAGCGCAAGATAAATACGGTATTGAATAGTGTAGGTTTATCCAAACCAGATGTTTGGAATATTAGTATCATATTGAATATAACAGCTTCTGACATTCTATATATATGGAATATTCAGCAGAAGAGTGAACAAGAGAAATGTGAAATAAAGGAAGTGCAGGAGGTTCGGGACAATGAGAATAATGGCTTCAGTGATGTGTCTGAGAAGGAAGAACTTGTTAAAGAAATCCAAAATTTAAGGAGTAAGCTGCAGGCATTTGCTGATGTTTCAACTAACAAGTCAACTGACAAGCTGAGGTCCTCGCTATTGTTGTCACGGTCCATCCAACTAAGAAAAAGCGGTCTAGGAGGAGGAGGAGGAGGAGGTTGTCAAACTATTAACGAGGAGGAACTTGAAAAGGAAAGGGAGAGATGGACAGAAATGGAGAGTGAATGGATTTCATTAACTGATGAACTGAGAGTCGATTTGGAATCCATTCGGCGGCGTGCAGAGAAGGTGGAGAATGAACTGAATTCAGAGAAGAAGTGCAATGAGGAGCTGGAGGATGCCCTTCACAGATCTGTTCTTGGACATGCTAGATTTGTTGAGCATTATGCTGAATTGCAAGAGAAATATAATGAGTTGGTGGGAAAGCACCGTGCCATCATGGGAGGGATAGCTGAGGTTAAAAGGGCTGCACAAAAGGCTGGTTCCAAAGGACATGGTTCTCGCTTTTCTAAATCCCTCGCTGCTGAGCTTTCAGCTCTGAGATTTGAGAGGGACAGAGAGAGAGAATTATTGAAAAAGGAAAACAAAGGCCTCAAGGTTCAACTTAGAGACACTGCTGAAGCTGTCCATGCTGCTGGGGAACTTCTTGTTAGGCTTAGAGAAGCAGAACATTCAGCATCAGTTGCAGAGAACTTTACATCAGTTCAACAAGAAAACGAGAAGTTGAAGAAGCAAATGGAGAAACTCAAAAGAAAGCATAAGATGGAGATGATTACAATGAAGCAGTACCTTGCAGAGAGTAAATTGCCAGCTTCTGCTCTCGAACCACTATATCATCAGGATCACTCCGACCTTGGAAACGACAAGAGAGCATCGTACGTAGACGACGATCAAGCTTGGAGATCAGAATTTGGAGCTATATATCAAGAGCAGCACTACTAA 3510 40.88 SETMKSNTAESMETGFLGSISASSFRNLLPRSISSKKKLISSFSKKLPHSNSENMPPIDPNIPVKDDRISTTISKSGVRNSPHDALPPDSNLDLKVCDEVVQSDGQYEVPTPTYQPIKVVVRIRPNDREKEMDRTVKKISSDELTFQDQIINFGSKERNLFEEDIFSKIGIPLVKDALAGYNTSIMSYGQTGSGKTFTMWGPPSAMVEDPSPFSNQGLAPRIFQMLFSEIQKEQENSEGKLINYQCRCSFVEIFNEQIGDLLDPSQRNLKIKDDAKNGLYVENVTEEYVTSYDDVTQILIKGLSSRKVGATTINSKSSRSHIVFTFIIESWCKETSSKCFGSSKTSRINLVDLAGLERNVSDAMGRQSTREDKILKKSMSRLGHLIDSLAKETELRTSEERLYRSSCLTHLLRESFGGNAKLTVICAISPDNSFSGETLRTLRFGQRLKSVQNRPVINEIKEDDVNDLSDQIRQLKEELIRANTNSGKSVPKTGYFQGPNVRDSLNHLRVNINRSLILPSIDNDSDEEVNCNEEDVMELHQQLDKVHSFSEDSSDNRDSLQFSSVEESFASCSMSDDEVSYPQTIEEINPEEIFHDSKVPEPVNNQRSISVSSICHFPNLEDPPLSESPKIGNSQRKSLVVAPSFADHHEKMSDSFKFNKDVLRQSLSQSKNIRSSLRSSNTFEDPTESLAASLQRGLKIIDYHQQSSALNKSSVSFSFEHLARKSCPEVNKPVPSLQTLEEDNPIAISSPHQLCSSCQRRITKNDNSLVLSSSKELVGFNEGRDLAKRKINTVLNSVGLSKPDVWNISIILNITASDILYIWNIQQKSEQEKCEIKEVQEVRDNENNGFSDVSEKEELVKEIQNLRSKLQAFADVSTNKSTDKLRSSLLLSRSIQLRKSGLGGGGGGGCQTINEEELEKERERWTEMESEWISLTDELRVDLESIRRRAEKVENELNSEKKCNEELEDALHRSVLGHARFVEHYAELQEKYNELVGKHRAIMGGIAEVKRAAQKAGSKGHGSRFSKSLAAELSALRFERDRERELLKKENKGLKVQLRDTAEAVHAAGELLVRLREAEHSASVAENFTSVQQENEKLKKQMEKLKRKHKMEMITMKQYLAESKLPASALEPLYHQDHSDLGNDKRASYVDDDQAWRSEFGAIYQEQHY 1169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6646603 6652531 - CmoCh16G009770.1 Cmo16g00977 400012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00977 1169 PANTHER CENTROMERE PROTEIN E 83 779 - -
Cmo16g00977 1169 PANTHER CENTROMERE PROTEIN E 828 1167 - -
Cmo16g00977 1169 Coils Coil 936 970 - -
Cmo16g00977 1169 Coils Coil 458 485 - -
Cmo16g00977 1169 SMART kinesin_4 114 459 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo16g00977 1169 Coils Coil 1088 1115 - -
Cmo16g00977 1169 PANTHER KINESIN-LIKE PROTEIN KIN-12F 83 779 - -
Cmo16g00977 1169 PANTHER KINESIN-LIKE PROTEIN KIN-12F 828 1167 - -
Cmo16g00977 1169 Pfam Kinesin motor domain 126 451 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo16g00977 1169 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 484 IPR027417 -
Cmo16g00977 1169 Coils Coil 856 876 - -
Cmo16g00977 1169 ProSiteProfiles Kinesin motor domain profile. 116 451 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo16g00977 1169 PRINTS Kinesin heavy chain signature 401 422 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo16g00977 1169 PRINTS Kinesin heavy chain signature 311 328 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo16g00977 1169 PRINTS Kinesin heavy chain signature 347 365 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo16g00977 1169 PRINTS Kinesin heavy chain signature 180 201 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo16g00977 1169 Coils Coil 1044 1064 - -
Cmo16g00977 1169 Gene3D Kinesin motor domain 113 490 IPR036961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00977 K10400 KIF15; kinesin family member 15 - csv:101203593 1724.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01602 Cmo-Chr6:11211962 Cmo16g00977 Cmo-Chr16:6646603 1.77E-07 dispersed
Cmo14g01560 Cmo-Chr14:12456629 Cmo16g00977 Cmo-Chr16:6646603 7.50E-06 dispersed
Cmo16g00977 Cmo-Chr16:6646603 Cmo17g00384 Cmo-Chr17:2386427 1.31E-67 dispersed
Cmo16g00977 Cmo-Chr16:6646603 Cmo06g00663 Cmo-Chr6:3355405 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g604 . . . . Bpe09g00138 . Bma10g00586 Bma13g01105 Cmo16g00977 . . . . . . . . . . . . . . . Cla10g00437 Cam10g0436 Cec10g0458 Cco10g0447 Clacu10g0444 Cmu10g1275 Cre10g0691 . . Cone14ag1198 Cone15ag1218 . Csa03g00446 . Cme06g02803 Blo07g00875 . Bda05g00688 . . Bpe03g00762 . . . . . . Cma16g00939 . Car16g00903 Cpe14g00763 . Bhi11g00510 . . . . . . . . . . . . . Lsi05g00529 . Chy06g01871 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004807 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 4 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00977 Cmo_Chr16 FPKM 7.908377 7.785583 6.948752 6.780513 8.886471 11.697673 9.338805 9.095933 10.055377 11.154388