Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00980 ATGGAATCAGATCTTGGCAAACTCTTTATTGGCGGAATTTCTTGGGATACTGATGAAGAACGTCTTAGGGATTATTTTGGAAACTATGGCGAAGTGGTTGAAGCTGTGATCATGAGAGATCGCACCACCGGTCGTGCTCGTGGCTTTGGCTTTGTTGTCTTTGCAGATCCTGTTGTTGCTGAGAGAGTCATTTTGGAGAAGCATATCATCGATGGCCGCACTGTTGAAGCTAAAAAGGCTGTTCCAAAGGATGATCAGAACATGTTGAATAGAAACATTGGTAGTAGCATTCAAGGTTCTCCTAGCTCGGGACGAACGAAAAAGATTTTCGTTGGAGGTTTAGCTTCAACAGTCACAGAGGCAGACTTTCAGAAGTACTTTGATCAGTTTGGCACAATCACTGATGTTGTTGTTATGTATGATCACAGCACACAAAGGCCGAGAGGTTTTGGGTTCATTACGTACGACTCGGAGGAGGTCGTCGACCGTGTGCTGCATAAAACCTTTCATGAACTCAATGGAAAAATGGTTGAGGTTAAAAGAGCAATCCCAAAAGAGCAAACCCCAGGGCCTAACCGGAGCCCTCTTGTAGGATATAACTTTGGTATGAGTAGAGCTAGTGGATTTCTTAACAACTATACTCAAGGCTATAATATGAGTCCTCTCAGAGGTATCGGAATCCGGTCCGATGGTAGGTTGAGTCCATTTCTTAGCCCTCGAACCGGGGTTCCTCCTTTAGGTTTGAATTTTGAGCAAGGGCTGAGGCAAGGCTATGGTAGGACTATGAACATTATGAATAGTCAAGCACAGGAACAAATGTTGAGTTCCTATTATAATGGAAATTCGAATAGGTACATTGCCCCGATTGGCTATAGCGGAGGCAATGGACGAGGCGATTCTCCGTTAAGCTCGAGTACGTGGAATGTCTGGGGAAATGGAAGTATGAGCACTGCTTCCATGAACTCTTCTGCCTCTGGAATGGGTAACTTCAGAGTGGCATATGGAAATAACGATGATAATTGGAATTTTCCTGCTGTTTCTAATCATGTTGGAGGAGGGAATGTTCCTGATAATGGATATGCAGTTCGAGACAATGGCGTCGGGTTCAGAGGAGACTATGGAGGAAATGTAGTCTCGAACGCAACCCAAAAACCATTTGCTGAAACAACCAATGGTTTCGAGAGGTCATACAGGGAATTATATCGTGATCAAGTCGTGCACGATGATGTAACTTGGCAGTCTACCGCTCCTGAACTCGATGATTCTATGGCTTTTGGTTATGGTCTTGGTAACCTCGCTTCAGACGATCCAACCAAAACTTCAGAGAGTTCTGTAGCAAATTACGACATTTCGAGCAGACAATCAACTAGAGGAATTGCTGCGTAG 1386 44.37 MESDLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPVVAERVILEKHIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFHELNGKMVEVKRAIPKEQTPGPNRSPLVGYNFGMSRASGFLNNYTQGYNMSPLRGIGIRSDGRLSPFLSPRTGVPPLGLNFEQGLRQGYGRTMNIMNSQAQEQMLSSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSTASMNSSASGMGNFRVAYGNNDDNWNFPAVSNHVGGGNVPDNGYAVRDNGVGFRGDYGGNVVSNATQKPFAETTNGFERSYRELYRDQVVHDDVTWQSTAPELDDSMAFGYGLGNLASDDPTKTSESSVANYDISSRQSTRGIAA 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6691881 6694651 - CmoCh16G009800.1 Cmo16g00980 400015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00980 461 SUPERFAMILY RNA-binding domain, RBD 107 194 IPR035979 GO:0003676
Cmo16g00980 461 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 461 - -
Cmo16g00980 461 CDD RRM2_DAZAP1 105 184 IPR034131 GO:0003723
Cmo16g00980 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Cmo16g00980 461 SMART rrm1_1 108 180 IPR000504 GO:0003723
Cmo16g00980 461 SMART rrm1_1 7 78 IPR000504 GO:0003723
Cmo16g00980 461 Gene3D - 6 88 IPR012677 -
Cmo16g00980 461 MobiDBLite consensus disorder prediction 433 461 - -
Cmo16g00980 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Cmo16g00980 461 MobiDBLite consensus disorder prediction 434 461 - -
Cmo16g00980 461 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 461 - -
Cmo16g00980 461 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Cmo16g00980 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 166 IPR000504 GO:0003723
Cmo16g00980 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Cmo16g00980 461 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Cmo16g00980 461 Gene3D - 104 192 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00980 K14411 MSI; RNA-binding protein Musashi - csv:101220541 769.229
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00879 Cmo16g00980 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00980 Cmo-Chr16:6691881 Cmo20g00669 Cmo-Chr20:3266129 3.54E-159 dispersed
Cmo20g00677 Cmo-Chr20:3316957 Cmo16g00980 Cmo-Chr16:6691881 5.58E-06 dispersed
Cmo06g00879 Cmo-Chr6:5003302 Cmo16g00980 Cmo-Chr16:6691881 0 transposed
Cmo16g00980 Cmo-Chr16:6691881 Cmo02g00222 Cmo-Chr2:1018558 4.67E-156 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g609 . . . . Bpe09g00137 . Bma10g00587 Bma13g01106 Cmo16g00980 Cmo06g00879 . . . . . . . . . . . . . . Cla10g00435 Cam10g0434 Cec10g0456 Cco10g0445 Clacu10g0442 Cmu10g1273 Cre10g0689 Cone6ag0030 Cone9ag0029 Cone14ag1200 Cone15ag1220 . Csa03g00443 . Cme06g02800 Blo07g00874 . Bda05g00687 Bda12g00948 . Bpe03g00761 . . . . . . Cma16g00941 . Car16g00905 Cpe14g00765 . Bhi11g00503 Tan01g1803 . . . . . . . . . . . . Lsi05g00527 . Chy06g01874 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003655 1 5 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 0 4 3 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00980 Cmo_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0