Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00981 ATGCCTGGTGTAACGACGGAGTCGTCCGAGAAGGACTCGGAGCCGTTTGTCGAAGTGAATCCAACGGGTCGATACGGGCGATACGGCGAGCTTCTAGGGTCGGGAGCGGTGAAGAAAGTGTACCGAGCGTTTGATCAAGAAGAAGGAATTGAGGTAGCTTGGAATCAAGTGAAATTAAGAAGCTTTTCAAATGATCCATCCATGATTGATAGGCTTTACTCGGAGGTGACATTGCTAAGAACCTTAAAGAACAATAACATCATTGCTTTGTACGATGTATGGCTTGACAAACTTCATGGAACCTTAAATTTCATTACCGAGGTTTGTACAAGTGGGAATCTTAGAGAATATAGGAAGAAACATAGGCAAGTTTCTTTGAAAGCCTTGAAGAAATGGTGTAAGCAAATTCTTAAGGGTTTGCATTATTTGCATACTCATGAGCCTTGTGTTATTCATAGAGATCTCAATTGTAGCAACCTCTTTGTCAATGGCAATGTTGGGCAGGTACTCATTCATGAACTTGGGCTAATCTTGAGCTTAATAATTGGCTTAATTTTAGGGTTTTCTCATGATTTTGGCTACAAATTTGTTGTCATGGTGAAGATTGGTGATTTGGGTATGGCTGCAACGGTGGGGAAGAATCACTCAGCTCATTCAGTGCTTGGGACACCGGAATTCATGGCACCTGAGCTATATGAAGAGCATTACACCGAGCTTGTGGACATATATTCATTTGGCATGTGTTTGCTTGAATTGGTCACCTTGGAAATTCCCTATAGTGAATGTGATAACGTTGCGAAAATCTATAAGAAAGTATGCTCGGGCATCAAGCCGTTGGCACTCGACAAGGTCAAGGACCTTGAGGTGAAGGCTTTCATTGAGAATTGCCTTGCTCCGTCTCAAGATCGGCCCTCGGCTGCTGACCTCCTCCGCCACTCGTTTTTCAGTGAAATTGACGAAGACGACGACGACGAGGATAGTAATGATCGTTAG 993 43.5 MPGVTTESSEKDSEPFVEVNPTGRYGRYGELLGSGAVKKVYRAFDQEEGIEVAWNQVKLRSFSNDPSMIDRLYSEVTLLRTLKNNNIIALYDVWLDKLHGTLNFITEVCTSGNLREYRKKHRQVSLKALKKWCKQILKGLHYLHTHEPCVIHRDLNCSNLFVNGNVGQVLIHELGLILSLIIGLILGFSHDFGYKFVVMVKIGDLGMAATVGKNHSAHSVLGTPEFMAPELYEEHYTELVDIYSFGMCLLELVTLEIPYSECDNVAKIYKKVCSGIKPLALDKVKDLEVKAFIENCLAPSQDRPSAADLLRHSFFSEIDEDDDDEDSNDR 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6714689 6715930 - CmoCh16G009810.1 Cmo16g00981 400016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00981 330 PANTHER SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN 190 329 - -
Cmo16g00981 330 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 177 - -
Cmo16g00981 330 Gene3D Phosphorylase Kinase; domain 1 9 107 - -
Cmo16g00981 330 PANTHER SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN 2 177 - -
Cmo16g00981 330 Pfam Protein kinase domain 30 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00981 330 Gene3D Transferase(Phosphotransferase) domain 1 109 321 - -
Cmo16g00981 330 ProSiteProfiles Protein kinase domain profile. 26 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00981 330 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 190 329 - -
Cmo16g00981 330 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00981 Cmo-Chr16:6714689 Cmo20g00670 Cmo-Chr20:3271666 1.41E-156 dispersed
Cmo06g00880 Cmo-Chr6:5019086 Cmo16g00981 Cmo-Chr16:6714689 0 transposed
Cmo16g00981 Cmo-Chr16:6714689 Cmo02g00223 Cmo-Chr2:1026703 1.88E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74977 PF00069 Pkinase 6.00E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00981 K08867 - csv:101221172 509.22