Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00982 ATGGACCCCACTGAACCTGCCTCCACCGCCGCTGCCGGCGCCAAGTACAAGCTCATGTCTCCGGCTAAGCTTCCGATCTTCCGCTCTCCTTGCATTACCATCCCTCCCGGCCTTAGTCCCTCTTCCTTTCTCGACTCTCCTGTTTTGCTTACTAACTTCAAGGTAGAGCCTTCTCCGACAACTGGGTCCTTTACCAAGCTGCCAATGACACATGACTCTTCTAGCTCCGCTATTTATCCGATGACCACCATGGCTTGCTCAAATGCTAATGCCTCAGATGAAGGAAACTCCAACTACTTCGAGTTCAAGCCATATGTTGGACCAAATATGGTTCCTGCAGATATGAATCATAGAAAAGATGAACAATCTTGTGAACTTCAAGTTCAAGGCCAACCTCAACCATTTACTGCTCCACCCATGACTAAAAGTGAGATCAATGTCATTTCAAATGATTCGAGTCGATCAACCCAGATGGATCCAGTTGCCTCAGGGGCTGCTGTTCCTGATATTGATGGAGACGATTTCAATCATAGTCTGAACACAAATACCAGGGCACAGGCCGCACAATCTGATCCAAAAGGCAGTGGCAGTCCAGTAGTTTCAGATAGGATATCTGATGATGGATATAACTGGCGGAAGTATGGACAGAAGCATGTTAAAGGGAGCGAATTTCCCCGTAGTTATTATAAATGTACACATCCTAACTGTGAAGTGAAAAAGCTCTTTGAGCGCTCTCACAATGGACAAATAACCGATATTGTCTATAAGGGTACTCATGATCATCCTAAGCTTCAGCCAAGTCGGCGATATTCTGCAGGTGCTTCTGTGAAAGATGGTCCTGATAAGCCTTCACCTTTAACTGGCCAAGATGACAGGTCGTGCAGCATATACACTCAGACAGTGCATTCCATTGAGCCAAATGGAACTCCCGAACGACTGGCTGCAAATGATAGCAACACCGAAGGTGCAGGAACAACTCTGCCATGCAAGAATCCTGATGAGCTTGATGATGATGACATAATCTTGAAGCGGAGGAAAATGGAACTTGGTGGTTTTGAGGCATGCCCAATGGTTAGGCCAATTAGGGAACCGCGTGTTGTGGTTCAAACTTTAAGTGAGGTTGATATACTGGATGATGGGTATCGCTGGCGCAAATATGGCCAGAAGGTAGTGAGAGGAAACCCGAACCCAAGGAGTTATTACAAGTGCACAAATGTTGGATGTCCCGTCAGAAAACATGTCGAAAGAGCATCTCATGACCCAAAAGCTGTTATTACTACATATGAAGGGAAACATAATCACGATGTCCCCACTGCAAAAAGTAGTAGCCATGACGCTGCAGGCCCATTGAGAACCGCACCATTGAGGTATAGACTCGAAGACAGGGACACCGTAAGCCTTGATCTTGGCGTTGGCATTGGTGAAAATAGATCGAACGAGTACAGGCAGCAGCCTCTCGCTCCAAATGGCAATTTCAACTTCGAAGTAGTTCAAGAAAACTCAGCCCCAACATATTTCAATGTTCACAATAGAGGTATGAACCAGCATGGACCAAGAGAGAGCTTGAGCGAGAGCCAAAGCGTGGACGTTGTTCCGCTAAACCATTCGTCTCACCCATATCCGCCGAGCGTCGGGAGAATACTAACAGGGCCATAG 1656 46.74 MDPTEPASTAAAGAKYKLMSPAKLPIFRSPCITIPPGLSPSSFLDSPVLLTNFKVEPSPTTGSFTKLPMTHDSSSSAIYPMTTMACSNANASDEGNSNYFEFKPYVGPNMVPADMNHRKDEQSCELQVQGQPQPFTAPPMTKSEINVISNDSSRSTQMDPVASGAAVPDIDGDDFNHSLNTNTRAQAAQSDPKGSGSPVVSDRISDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHNGQITDIVYKGTHDHPKLQPSRRYSAGASVKDGPDKPSPLTGQDDRSCSIYTQTVHSIEPNGTPERLAANDSNTEGAGTTLPCKNPDELDDDDIILKRRKMELGGFEACPMVRPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKSSSHDAAGPLRTAPLRYRLEDRDTVSLDLGVGIGENRSNEYRQQPLAPNGNFNFEVVQENSAPTYFNVHNRGMNQHGPRESLSESQSVDVVPLNHSSHPYPPSVGRILTGP 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6726015 6730845 + CmoCh16G009820.1 Cmo16g00982 400017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00982 551 MobiDBLite consensus disorder prediction 513 533 - -
Cmo16g00982 551 MobiDBLite consensus disorder prediction 150 209 - -
Cmo16g00982 551 Pfam WRKY DNA -binding domain 378 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo16g00982 551 Pfam WRKY DNA -binding domain 206 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo16g00982 551 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 8 520 - -
Cmo16g00982 551 MobiDBLite consensus disorder prediction 257 334 - -
Cmo16g00982 551 SMART WRKY_cls 377 436 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo16g00982 551 SMART WRKY_cls 205 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo16g00982 551 MobiDBLite consensus disorder prediction 513 551 - -
Cmo16g00982 551 MobiDBLite consensus disorder prediction 175 196 - -
Cmo16g00982 551 ProSiteProfiles WRKY domain profile. 372 437 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo16g00982 551 Gene3D WRKY domain 198 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo16g00982 551 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 8 520 IPR044810 GO:0003700
Cmo16g00982 551 MobiDBLite consensus disorder prediction 288 326 - -
Cmo16g00982 551 ProSiteProfiles WRKY domain profile. 200 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo16g00982 551 Gene3D WRKY domain 364 430 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo16g00982 551 SUPERFAMILY WRKY DNA-binding domain 369 437 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo16g00982 551 SUPERFAMILY WRKY DNA-binding domain 203 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00719 Cmo16g00982 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01838 Cmo-Chr11:12836938 Cmo16g00982 Cmo-Chr16:6726015 8.64E-69 dispersed
Cmo16g00982 Cmo-Chr16:6726015 Cmo16g01037 Cmo-Chr16:7226008 9.94E-14 dispersed
Cmo16g00982 Cmo-Chr16:6726015 Cmo06g00665 Cmo-Chr6:3368431 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11315 PF03106 WRKY 3.10E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00982 - - bhj:120090463 955.666