Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g00982 | ATGGACCCCACTGAACCTGCCTCCACCGCCGCTGCCGGCGCCAAGTACAAGCTCATGTCTCCGGCTAAGCTTCCGATCTTCCGCTCTCCTTGCATTACCATCCCTCCCGGCCTTAGTCCCTCTTCCTTTCTCGACTCTCCTGTTTTGCTTACTAACTTCAAGGTAGAGCCTTCTCCGACAACTGGGTCCTTTACCAAGCTGCCAATGACACATGACTCTTCTAGCTCCGCTATTTATCCGATGACCACCATGGCTTGCTCAAATGCTAATGCCTCAGATGAAGGAAACTCCAACTACTTCGAGTTCAAGCCATATGTTGGACCAAATATGGTTCCTGCAGATATGAATCATAGAAAAGATGAACAATCTTGTGAACTTCAAGTTCAAGGCCAACCTCAACCATTTACTGCTCCACCCATGACTAAAAGTGAGATCAATGTCATTTCAAATGATTCGAGTCGATCAACCCAGATGGATCCAGTTGCCTCAGGGGCTGCTGTTCCTGATATTGATGGAGACGATTTCAATCATAGTCTGAACACAAATACCAGGGCACAGGCCGCACAATCTGATCCAAAAGGCAGTGGCAGTCCAGTAGTTTCAGATAGGATATCTGATGATGGATATAACTGGCGGAAGTATGGACAGAAGCATGTTAAAGGGAGCGAATTTCCCCGTAGTTATTATAAATGTACACATCCTAACTGTGAAGTGAAAAAGCTCTTTGAGCGCTCTCACAATGGACAAATAACCGATATTGTCTATAAGGGTACTCATGATCATCCTAAGCTTCAGCCAAGTCGGCGATATTCTGCAGGTGCTTCTGTGAAAGATGGTCCTGATAAGCCTTCACCTTTAACTGGCCAAGATGACAGGTCGTGCAGCATATACACTCAGACAGTGCATTCCATTGAGCCAAATGGAACTCCCGAACGACTGGCTGCAAATGATAGCAACACCGAAGGTGCAGGAACAACTCTGCCATGCAAGAATCCTGATGAGCTTGATGATGATGACATAATCTTGAAGCGGAGGAAAATGGAACTTGGTGGTTTTGAGGCATGCCCAATGGTTAGGCCAATTAGGGAACCGCGTGTTGTGGTTCAAACTTTAAGTGAGGTTGATATACTGGATGATGGGTATCGCTGGCGCAAATATGGCCAGAAGGTAGTGAGAGGAAACCCGAACCCAAGGAGTTATTACAAGTGCACAAATGTTGGATGTCCCGTCAGAAAACATGTCGAAAGAGCATCTCATGACCCAAAAGCTGTTATTACTACATATGAAGGGAAACATAATCACGATGTCCCCACTGCAAAAAGTAGTAGCCATGACGCTGCAGGCCCATTGAGAACCGCACCATTGAGGTATAGACTCGAAGACAGGGACACCGTAAGCCTTGATCTTGGCGTTGGCATTGGTGAAAATAGATCGAACGAGTACAGGCAGCAGCCTCTCGCTCCAAATGGCAATTTCAACTTCGAAGTAGTTCAAGAAAACTCAGCCCCAACATATTTCAATGTTCACAATAGAGGTATGAACCAGCATGGACCAAGAGAGAGCTTGAGCGAGAGCCAAAGCGTGGACGTTGTTCCGCTAAACCATTCGTCTCACCCATATCCGCCGAGCGTCGGGAGAATACTAACAGGGCCATAG | 1656 | 46.74 | MDPTEPASTAAAGAKYKLMSPAKLPIFRSPCITIPPGLSPSSFLDSPVLLTNFKVEPSPTTGSFTKLPMTHDSSSSAIYPMTTMACSNANASDEGNSNYFEFKPYVGPNMVPADMNHRKDEQSCELQVQGQPQPFTAPPMTKSEINVISNDSSRSTQMDPVASGAAVPDIDGDDFNHSLNTNTRAQAAQSDPKGSGSPVVSDRISDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHNGQITDIVYKGTHDHPKLQPSRRYSAGASVKDGPDKPSPLTGQDDRSCSIYTQTVHSIEPNGTPERLAANDSNTEGAGTTLPCKNPDELDDDDIILKRRKMELGGFEACPMVRPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKSSSHDAAGPLRTAPLRYRLEDRDTVSLDLGVGIGENRSNEYRQQPLAPNGNFNFEVVQENSAPTYFNVHNRGMNQHGPRESLSESQSVDVVPLNHSSHPYPPSVGRILTGP | 551 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 6726015 | 6730845 | + | CmoCh16G009820.1 | Cmo16g00982 | 400017 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g00982 | 551 | MobiDBLite | consensus disorder prediction | 513 | 533 | - | - | |
Cmo16g00982 | 551 | MobiDBLite | consensus disorder prediction | 150 | 209 | - | - | |
Cmo16g00982 | 551 | Pfam | WRKY DNA -binding domain | 378 | 434 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo16g00982 | 551 | Pfam | WRKY DNA -binding domain | 206 | 262 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo16g00982 | 551 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 8 | 520 | - | - | |
Cmo16g00982 | 551 | MobiDBLite | consensus disorder prediction | 257 | 334 | - | - | |
Cmo16g00982 | 551 | SMART | WRKY_cls | 377 | 436 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo16g00982 | 551 | SMART | WRKY_cls | 205 | 263 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo16g00982 | 551 | MobiDBLite | consensus disorder prediction | 513 | 551 | - | - | |
Cmo16g00982 | 551 | MobiDBLite | consensus disorder prediction | 175 | 196 | - | - | |
Cmo16g00982 | 551 | ProSiteProfiles | WRKY domain profile. | 372 | 437 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo16g00982 | 551 | Gene3D | WRKY domain | 198 | 263 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo16g00982 | 551 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 8 | 520 | IPR044810 | GO:0003700 | |
Cmo16g00982 | 551 | MobiDBLite | consensus disorder prediction | 288 | 326 | - | - | |
Cmo16g00982 | 551 | ProSiteProfiles | WRKY domain profile. | 200 | 264 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo16g00982 | 551 | Gene3D | WRKY domain | 364 | 430 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo16g00982 | 551 | SUPERFAMILY | WRKY DNA-binding domain | 369 | 437 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo16g00982 | 551 | SUPERFAMILY | WRKY DNA-binding domain | 203 | 263 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo06g00719 | Cmo16g00982 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01838 | Cmo-Chr11:12836938 | Cmo16g00982 | Cmo-Chr16:6726015 | 8.64E-69 | dispersed | |
Cmo16g00982 | Cmo-Chr16:6726015 | Cmo16g01037 | Cmo-Chr16:7226008 | 9.94E-14 | dispersed | |
Cmo16g00982 | Cmo-Chr16:6726015 | Cmo06g00665 | Cmo-Chr6:3368431 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11315 | PF03106 | WRKY | 3.10E-25 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g00982 | - | - | bhj:120090463 | 955.666 |