Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00983 ATGCAGGAATCGTCAAGAAAGAAACTTCCGAACCAATCTCATAGGTTCTACGAACAGCCACCGCAAGAACCTGGGTCGTGTTACTGGCCTCCTATGAACCATGGAGGTGGCTTGTACTCTGATGATGTATTCGAACAAAATCACTTACCATCTGAGGCTTTCAAACAGTACTGCAACCTCGAGTCATCCTCGGGAACTAGTGGTTACCCTCCTCAAAATTCTTCCTCGACTGCTAGCTTCACGTCGAATGGAAGCCCTTCTTCACACCAAGAGTGCCATTCGTACTCGTTAGACCCGTATTATTCTCCCGACAATAACTGTGGTTCACCTGTCAGTAGATCTTGTTTAACAGATGATGCTGCCGATGACTTAAGGCACAAAATCAGGGAATTGGAGACTGCAATGCTTGGACCGGATACCGATGGGTTTGACATCTACTCGGTCGCTAATCCAGTCGATCCTGTATTGCCTGTGCAAGCAGGGTGGAAAGATGTGGCTGAGATAATGTCGAGAAAGGATTTGAAAGAGATGCTCTGTGCTTGTGCACGAGCAATAGGGGAAAACAATATGTTGACTGGTGAATGGTTGGTGTCGGAGCTACGTGGAATGGTCTCGGTTTCGGGTGAGCCAATCCAGCGTTTAGGAGCTTACTTGTTAGAGGCACTTATTGCAAGGACAGCCTCTTCAGGCAATTCTATCTGCAAAGCCTTAAGATGTAAAGAGCCTATAGGTACTGAGATGCTCTCATACATGCACATTCTCTATGAAATTTGCCCTTATTTCAAGTTTGGATACCTTTCAGCAAATGGGGCAATTGCTGAAGCCATTAAAGGTGAAAATAGAGTTCACATAATTGATTTCCAGATAGCACAGGGAAATCAATGGATTACATTGATGCAAGCTCTTGCAAATCGACCCGGAGGACCCCCGAAGGTTACCATTACAGGCATAGATGATTCCGCTTCTGCTTTTGCTCGAGGAGGAGGGCTCGAGATTGTCGGGAAAAGGTTGTCGCTTTTGGCGGAGTCGTTAATGGTACCCTTTGAGTTTCGTGGAATTGCAGGCTCTGCTGATGAAATTCAACGCGAAGATCTTAAAGTTCAACCAGGTGAAGCCATTGCTGTGAGTTTTACCTTGGTGCTGCATCATATGCCCGACGAAAGCGTTGGCAGTCAGAATCACCGGGATCGAATCTTGCGGCTGGTCAAGAGCTTGTCTCCCAAAGTTGTGACAGTCGTCGAGCACGAGTCGAACAACAATACAGCTCCCTTTTATTCCCGTTTCCTCCAGACATTAAAATATTACACAGCTATCTTCGAATCCATAGATGTTACCCTCCCAAGAGATCACAAGGAGCGAATCAACGTGGAGCAGCACTGTTTAGCTCGCGACATCGTAAACATAGTAGCCTGTGAAGGAGCCGAAAGAGTCGAACGTCATGAACTTCTCGGAAAATGGAGATCACGGTTCCTCATGGCGGGGTTTAAGCCACACCCTTTAAGCCCTTTTGTCAATGCTACCATTGAGGCACTGCTAAAGAATTACAGTGACAAGTACACGCTTGAAGAAAGGGATGGGGCTCTATATCTCGGCTGGCTGAATCAAAATTTGGTTACCTCTAGTGCTTGGATATGA 1635 46.42 MQESSRKKLPNQSHRFYEQPPQEPGSCYWPPMNHGGGLYSDDVFEQNHLPSEAFKQYCNLESSSGTSGYPPQNSSSTASFTSNGSPSSHQECHSYSLDPYYSPDNNCGSPVSRSCLTDDAADDLRHKIRELETAMLGPDTDGFDIYSVANPVDPVLPVQAGWKDVAEIMSRKDLKEMLCACARAIGENNMLTGEWLVSELRGMVSVSGEPIQRLGAYLLEALIARTASSGNSICKALRCKEPIGTEMLSYMHILYEICPYFKFGYLSANGAIAEAIKGENRVHIIDFQIAQGNQWITLMQALANRPGGPPKVTITGIDDSASAFARGGGLEIVGKRLSLLAESLMVPFEFRGIAGSADEIQREDLKVQPGEAIAVSFTLVLHHMPDESVGSQNHRDRILRLVKSLSPKVVTVVEHESNNNTAPFYSRFLQTLKYYTAIFESIDVTLPRDHKERINVEQHCLARDIVNIVACEGAERVERHELLGKWRSRFLMAGFKPHPLSPFVNATIEALLKNYSDKYTLEERDGALYLGWLNQNLVTSSAWI 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6731154 6732788 - CmoCh16G009830.1 Cmo16g00983 400018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00983 544 MobiDBLite consensus disorder prediction 1 32 - -
Cmo16g00983 544 Pfam GRAS domain family 175 543 IPR005202 -
Cmo16g00983 544 ProSiteProfiles GRAS family profile. 165 544 IPR005202 -
Cmo16g00983 544 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 543 IPR005202 -
Cmo16g00983 544 PANTHER GIBBERELLIN-RESPONSIVE PROTEIN, PUTATIVE-RELATED 17 543 - -
Cmo16g00983 544 MobiDBLite consensus disorder prediction 62 92 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00910 Cmo-Chr9:4762310 Cmo16g00983 Cmo-Chr16:6731154 2.94E-172 dispersed
Cmo16g00983 Cmo-Chr16:6731154 Cmo20g00673 Cmo-Chr20:3276967 0 dispersed
Cmo11g00876 Cmo-Chr11:4488666 Cmo16g00983 Cmo-Chr16:6731154 4.23E-60 transposed
Cmo16g00983 Cmo-Chr16:6731154 Cmo02g00224 Cmo-Chr2:1031828 0 wgd
Cmo16g00983 Cmo-Chr16:6731154 Cmo06g00666 Cmo-Chr6:3372485 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11316 PF03514 GRAS 2.10E-128 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00983 - - csv:101220072 981.474