Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01000 ATGACCCCAAGAAATCTCCTCGCCGTCGCCCTTTTCCTCCTCCTCTTCACTCCGCCAAGAACACAGAGTATCGGCTTCGATTTCAATTCTTTCAACATCAGAAACCTCACTCTCCTCGGCGATTCCCACTTCCGCGACGGCGTTATCGGCCTCACCAAGGAGCTCGGGGTCCCTTCCTCCAGCGCCGGCGCTGTAATTTATAATCACCCCATCGGATTATACGACGCCGATACCAACATTACTGCCTCTTTCTCCACAAGATTCTCTTTCTCCATCACTAATACTAACCCCACTTTCTCCGGCGACGGTCTCTCCTTTTTCCTCTCCCCTGATAATCGGACCCTCGGTAGTCCCGGTGGGTATTTGGGCCTTGTCAATTCCTCCCGTTTGGTTAACAAGTTTGTCGCGGTTGAATTCGACACTCGGCTTGATTCTGTCTTCAATGATCCTAATGATCACCATGTTGGCTTCGACATTGAAAGCTTGGTTTCAATCAAGACGGCCGATCCTGCTTCTCAAGAGCTCAATCTCAAGAGTGGGGAGTCCATTACGGCTTGGATTGAGTACAAGAATGAGGAGTGTAGGTTGAGGGTTTTCTTGAGTAATTCTAGTTTGAAGCCTTCCGAGGCGCTTCTCGACGTTAACATCGATCTTTCGAGCTATCTTAAGGAGGTTATGTATGTCGGGTTTTCGGGTTCGACTGAAGGGAGTACTGATCTTTATTTGATTGAGAGTTGGAGCTTTCATACTTCTGGGTTTGTTCCTGCTCGACGTCGATTTAAGCCTCATAATGTTTCTGATAGCTCTGTGATTGATTCTCCTAATATTTCTATATCTGATTCTGGAAATGGTTATCACAGTCGGCTCGGGCTGGGTCTCGGGATCGCCGGACCGGCCTTCTTTTGTGCTGTGATTGCTGTGTTTGGCTTCTTTTCACTTAGGAAATGGAGGAAGATTAGGACTCAGAAGAGCTTCAAGGCAGAGCTTTTGACAGGTCCTAGGGAGTTTAGTTACAGAGAACTAAAGAGAGCCACAAAAGGATTTCACTCCAGTAGGATCATTGGCAATGGGGCTTTTGGGACTGTCTATAAGGCTTTTTGCACCTCATCAGGAGGCATTTCGGCCGTTAAAAGATCGAAGCATTCCCACGAAGGAAAGACCGAGTTTCTGGCCGAGTTGACGATCATAGCTCGGTTGAGGCACAAAAATTTAGTTCAGCTCCAAGGTTGGTGCGTCGAGAAAGGTGAACTGCTTCTCGTTTACGAATTTATGCTGAATGGGAGCCTTGATAAGCTGCTTTACCAGGAATCTGTAGAAGCTAGCTTGTTAAACTGGTCTCACAGATACAACATTGCTGTTGGATTGGCCTCTGTGCTGACATATCTACATCAGGAATGTGAGCAGCAGGTGATTCACAGAGATATAAAGACTGGTAATGTACTTCTGGATGCGAACTTCAATGCCAGACTGGGCGATTTTGGATTGGCAAAGCTCATGGATCACGACAAGAGCCCGGTTTCAACTCTAACCGCAGGAACAATGGGATACCTCGCACCTGAGTATCTACAATACGGGAAAGCGACTGAGAAAACCGATGTCTTCAGCTACGGTGTGGTTATGCTTGAAGTGGCCTGTGGGAGGAGGCCGATCGAAAGAGAAGCAGGTACTCAAAAGATGGTCAATCTGGTAGACTGGGTTTGGGGATTACATTCTCAGGGAAAGATCATCGAAGCAGCCGATAAAAGGTTGAATGGCGAGTTCAAGGAAGAAGAAATGAGGAAACTGTTACTTGTTGGATTGAGCTGTGCAAACCCGGATAGCTCGGTCAGGCCTTCGATGAGGAAGGTCCTACAGATTCTCAACAATGAGACGGAGCCGGTGTTCGTGCCAAAACTGAAGCCTAGTCTTACCTTTTCTTGTGGCTTTTCACTGACCGTGGATGACATTATAGTAGAGGAAGGAGGAGGAGAGTGGGAATCTGCAAAGGCAACCACTATCCAAATAGACTGA 2010 47.36 MTPRNLLAVALFLLLFTPPRTQSIGFDFNSFNIRNLTLLGDSHFRDGVIGLTKELGVPSSSAGAVIYNHPIGLYDADTNITASFSTRFSFSITNTNPTFSGDGLSFFLSPDNRTLGSPGGYLGLVNSSRLVNKFVAVEFDTRLDSVFNDPNDHHVGFDIESLVSIKTADPASQELNLKSGESITAWIEYKNEECRLRVFLSNSSLKPSEALLDVNIDLSSYLKEVMYVGFSGSTEGSTDLYLIESWSFHTSGFVPARRRFKPHNVSDSSVIDSPNISISDSGNGYHSRLGLGLGIAGPAFFCAVIAVFGFFSLRKWRKIRTQKSFKAELLTGPREFSYRELKRATKGFHSSRIIGNGAFGTVYKAFCTSSGGISAVKRSKHSHEGKTEFLAELTIIARLRHKNLVQLQGWCVEKGELLLVYEFMLNGSLDKLLYQESVEASLLNWSHRYNIAVGLASVLTYLHQECEQQVIHRDIKTGNVLLDANFNARLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATEKTDVFSYGVVMLEVACGRRPIEREAGTQKMVNLVDWVWGLHSQGKIIEAADKRLNGEFKEEEMRKLLLVGLSCANPDSSVRPSMRKVLQILNNETEPVFVPKLKPSLTFSCGFSLTVDDIIVEEGGGEWESAKATTIQID 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6893728 6895737 - CmoCh16G010000.1 Cmo16g01000 400035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01000 669 ProSiteProfiles Protein kinase domain profile. 348 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g01000 669 Pfam Legume lectin domain 25 256 IPR001220 GO:0030246
Cmo16g01000 669 Gene3D - 21 265 - -
Cmo16g01000 669 ProSitePatterns Protein kinases ATP-binding region signature. 354 377 IPR017441 GO:0005524
Cmo16g01000 669 SUPERFAMILY Protein kinase-like (PK-like) 331 640 IPR011009 -
Cmo16g01000 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Cmo16g01000 669 CDD lectin_legume_LecRK_Arcelin_ConA 26 252 IPR001220 GO:0030246
Cmo16g01000 669 Gene3D Phosphorylase Kinase; domain 1 311 423 - -
Cmo16g01000 669 Gene3D Transferase(Phosphotransferase) domain 1 424 637 - -
Cmo16g01000 669 ProSitePatterns Legume lectins beta-chain signature. 135 141 IPR019825 -
Cmo16g01000 669 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 256 IPR013320 -
Cmo16g01000 669 CDD STKc_IRAK 354 622 - -
Cmo16g01000 669 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 21 640 - -
Cmo16g01000 669 Pfam Protein kinase domain 348 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g01000 669 PANTHER - 21 640 - -
Cmo16g01000 669 SMART serkin_6 348 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02549 Cmo-Chr4:18685790 Cmo16g01000 Cmo-Chr16:6893728 2.19E-149 dispersed
Cmo06g00363 Cmo-Chr6:1755274 Cmo16g01000 Cmo-Chr16:6893728 0 dispersed
Cmo11g01827 Cmo-Chr11:12781870 Cmo16g01000 Cmo-Chr16:6893728 2.10E-128 dispersed
Cmo16g01000 Cmo-Chr16:6893728 Cmo06g00285 Cmo-Chr6:1423945 1.27E-138 dispersed
Cmo19g00842 Cmo-Chr19:8211605 Cmo16g01000 Cmo-Chr16:6893728 6.21E-131 dispersed
Cmo16g01000 Cmo-Chr16:6893728 Cmo14g00192 Cmo-Chr14:869864 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74978 PF00069 Pkinase 8.80E-51 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01000 - - csv:101209797 1189.87