Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01003 ATGGTAAAAAAATTTAACCGTTTGGTTTTAGGGTTGAACCACCACCTCACAAACGGTGCAACCGCCACTGGCAACTCCCCTGCTACCTGCCACGTGCCGGTCACTGGTGCCAACAACGAGCAGAGCCAACAATGCATGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCCAAGATATCCGACGATGCCAAGGAGACCATCCAAGAATGTGTATCAGAGTACATCAGCTTCATCACTGGAGAAGCTAACGAGCGATGCCAACGGGAGCAGCGCAAGACAGTGACAGCAGAGGATGTCCTTTGGGCTATGGGGAAGCTCGGCTTTGACGACTACATTGAGCCACTAACTATGTTCCTCAACCGATACCGTGAGTCGGAGAGTGATCGAGTTCGTACTGAGCCGATCTTGAGGCGCAATGTGGATTATGTGCCACAAGTGGGGATGATGCCACCGTACGGGCAAGCGTTTCCATTGGGGCACACCTCGACAGGGATGTTCGATGCAATGGGCGGATATTACGGTGGAGGTAGGAGTGGCGGGACGAGCTCTGGAAACGGTAATCAGCTTTGA 612 52.29 MVKKFNRLVLGLNHHLTNGATATGNSPATCHVPVTGANNEQSQQCMVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTMFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGGRSGGTSSGNGNQL 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6904163 6904959 + CmoCh16G010030.1 Cmo16g01003 400038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01003 203 ProSitePatterns NF-YB/HAP3 subunit signature. 84 100 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cmo16g01003 203 PRINTS CCAAT-binding transcription factor subunit A signature 119 137 - -
Cmo16g01003 203 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Cmo16g01003 203 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Cmo16g01003 203 Gene3D Histone, subunit A 40 154 IPR009072 GO:0046982
Cmo16g01003 203 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 54 117 IPR003958 -
Cmo16g01003 203 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 34 171 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cmo16g01003 203 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 34 171 - -
Cmo16g01003 203 SUPERFAMILY Histone-fold 50 143 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00683 Cmo-Chr6:3472988 Cmo16g01003 Cmo-Chr16:6904163 5.47E-105 dispersed
Cmo16g01003 Cmo-Chr16:6904163 Cmo14g00178 Cmo-Chr14:811623 9.83E-46 dispersed
Cmo16g01003 Cmo-Chr16:6904163 Cmo06g00682 Cmo-Chr6:3468038 4.40E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11317 PF00808 CBFD_NFYB_HMF 2.20E-25 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01003 K08065 - csv:116402762 304.679