Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01006 ATGGCGGACTCCGACAACGACTCCGGTGGTGGCTACCAGAAATCGCCGTCTCCGCGGGAGCACGACGGACTTCTCCCGATCGCCAACGTTGGCCGGATCATGAAGAAAGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAGATCGTCCAAGAGTGCGTCTCCGAGTTCATCAGCTTCGTCACTGGTGAGGCCTCCGACAAGTGCCACAACGAGAAGCGAAAGACTATCAACGGCGATGATTTACTTTGGGCCATGGCTACCTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTTATCTCCAGCGCTTTCGAGAAATTGAAGGCGAAAGGACCGCGCTAGCCTCGCGTGACTCCTCCTCCTCTGCCTCCGCCGTTGCCGCCGCCGCCGCCGGGGCTGCGAATAGTACTTTCTTTGACGGCGGCGGCGAGTTCGGGGGTGGGATGGGGATGACGATGCCTCCGAATGTTTACGGGTCGAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG 543 58.93 MADSDNDSGGGYQKSPSPREHDGLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASRDSSSSASAVAAAAAGAANSTFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFTTTGRPR 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 6914249 6914791 - CmoCh16G010060.1 Cmo16g01006 400041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01006 180 MobiDBLite consensus disorder prediction 155 180 - -
Cmo16g01006 180 MobiDBLite consensus disorder prediction 1 24 - -
Cmo16g01006 180 Gene3D Histone, subunit A 11 140 IPR009072 GO:0046982
Cmo16g01006 180 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 149 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cmo16g01006 180 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cmo16g01006 180 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Cmo16g01006 180 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Cmo16g01006 180 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Cmo16g01006 180 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 25 88 IPR003958 -
Cmo16g01006 180 SUPERFAMILY Histone-fold 22 126 IPR009072 GO:0046982
Cmo16g01006 180 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 149 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00683 Cmo16g01006 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00687 Cmo-Chr6:3488191 Cmo16g01006 Cmo-Chr16:6914249 4.68E-86 dispersed
Cmo16g01006 Cmo-Chr16:6914249 Cmo20g00682 Cmo-Chr20:3345325 6.99E-54 dispersed
Cmo16g01006 Cmo-Chr16:6914249 Cmo02g00237 Cmo-Chr2:1117825 1.93E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11318 PF00808 CBFD_NFYB_HMF 4.80E-27 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01006 K08065 - csv:101204640 285.804