Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g01006 | ATGGCGGACTCCGACAACGACTCCGGTGGTGGCTACCAGAAATCGCCGTCTCCGCGGGAGCACGACGGACTTCTCCCGATCGCCAACGTTGGCCGGATCATGAAGAAAGCTCTCCCTGGGAACGCCAAGATCTCAAAGGACGCCAAAGAGATCGTCCAAGAGTGCGTCTCCGAGTTCATCAGCTTCGTCACTGGTGAGGCCTCCGACAAGTGCCACAACGAGAAGCGAAAGACTATCAACGGCGATGATTTACTTTGGGCCATGGCTACCTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGCTTTATCTCCAGCGCTTTCGAGAAATTGAAGGCGAAAGGACCGCGCTAGCCTCGCGTGACTCCTCCTCCTCTGCCTCCGCCGTTGCCGCCGCCGCCGCCGGGGCTGCGAATAGTACTTTCTTTGACGGCGGCGGCGAGTTCGGGGGTGGGATGGGGATGACGATGCCTCCGAATGTTTACGGGTCGAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAG | 543 | 58.93 | MADSDNDSGGGYQKSPSPREHDGLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASRDSSSSASAVAAAAAGAANSTFFDGGGEFGGGMGMTMPPNVYGSNGPRWDGPGFTTTGRPR | 180 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 6914249 | 6914791 | - | CmoCh16G010060.1 | Cmo16g01006 | 400041 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g01006 | 180 | MobiDBLite | consensus disorder prediction | 155 | 180 | - | - | |
Cmo16g01006 | 180 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cmo16g01006 | 180 | Gene3D | Histone, subunit A | 11 | 140 | IPR009072 | GO:0046982 | |
Cmo16g01006 | 180 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 149 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Cmo16g01006 | 180 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 55 | 71 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Cmo16g01006 | 180 | PRINTS | CCAAT-binding transcription factor subunit A signature | 52 | 70 | - | - | |
Cmo16g01006 | 180 | PRINTS | CCAAT-binding transcription factor subunit A signature | 71 | 89 | - | - | |
Cmo16g01006 | 180 | PRINTS | CCAAT-binding transcription factor subunit A signature | 90 | 108 | - | - | |
Cmo16g01006 | 180 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 25 | 88 | IPR003958 | - | |
Cmo16g01006 | 180 | SUPERFAMILY | Histone-fold | 22 | 126 | IPR009072 | GO:0046982 | |
Cmo16g01006 | 180 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 | 1 | 149 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo06g00683 | Cmo16g01006 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00687 | Cmo-Chr6:3488191 | Cmo16g01006 | Cmo-Chr16:6914249 | 4.68E-86 | dispersed | |
Cmo16g01006 | Cmo-Chr16:6914249 | Cmo20g00682 | Cmo-Chr20:3345325 | 6.99E-54 | dispersed | |
Cmo16g01006 | Cmo-Chr16:6914249 | Cmo02g00237 | Cmo-Chr2:1117825 | 1.93E-60 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11318 | PF00808 | CBFD_NFYB_HMF | 4.80E-27 | CL0012 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g01006 | K08065 | - | csv:101204640 | 285.804 |