Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01022 ATGATGGTGGAGTTCCTTCAAACTCACTTTGGAACCTTTCAAGTTTTGGTGAATCTACAATCATTGGCAACATTGACACAGGTCGTGTTTGGCCAGAATCAAAAAGCTTCAGTGATGAAGGATATGGACCTATCCCAACCAGATGGAAGGGAAGTTGTGAAGGTGGCTTTAACTTTAGTTGCAACAGCGGGAGGAAATTTCGTTGAAGGAGTAAGCTTTTTTGGGAATGGTAATGGCACTGCAAAAGGGGGTTCCCCTAAAGCCCTTGTTGCTGCCTATAGAGTATGTTGGCCTTCAATGGGGAGTGGTGGGTGTTTTATGGCCGATATTCTAGCTGGCATTGAAGCTGCCATTAGTGATGGAGTTGACGTTCTATCGATTTCACTCGGTGGAAATACCGAAGAATTTTCTGACAATCTAATAGCTATAGGGTCCTTCCATGCAGTGAAGAACGGCATCACTGTTGTTTGTTCTGCTGGGAATTCAGGACCATTTGAAGGCAGTGTCGAAAATGTCGCACCATGGATAATAACTGTAGGAGCTAGCACAATTGATAGGCTTTTTACCACTAACGTGACATTGGGAGACAAGAGGCACTTCAAGGGTACAAGTCTTTCTAGTAAGACAATGCCAGCTGAGAAGTTTTATCCGATAATTCGTGCTTTAGATGCAAAATTCAACAATAGCCACGATATCGATGCCGCACTTTGTCTAAAAGGCTATACTGATGGTGAATTAATCGACCAATACATCCGGTCTAATAAAAATCCAATAGCTTACATCACTCCTGTGAAGACTGAGTTGGGAACCAAACCTGCACCAATTATGGCTTCATTCTCATCGAGAGGACCCAACCCAGTTGAGCTCTCAATACTCAAGCCTGATATAACAGCACCAGGTGTCAATATATTAGCAGCTTTCTCGGAGGAAAATTCAATAACTGGTTTACCTTATGATAAACGTCGGGTTCTTTTTAATGTATTATCTGGCACTTCTATGGCATGTCCCCATATTGCTGGTATCGTCGGCCTTCTCAAAACCCTTTATCCAAAATGGAGTCCCGCAGCTATCAGATCTGCAATCATGACTACAGCTGAAACCGAAGCTAATGACTTAAATCCAATACTAAGCTCAGAAAAGGAGAGAGCAAACCCATTGGCATATGGTGCAGGTCATGTCCAACCAAACAAAGCAGCAGATCCTGGCCTTGTTTACGACCTCTCCACCCAAGACTACTTGAACTTTCTATGTGCCCATGGCTACGACAAAGAACAAATGAAACTATTCTCCAATGATACTTCATTTGTCTGTTCAAAGTCATTCAAAGTATTAGACTTGAACTATCCTTCAATCTCGATCTATAATCTGACATCTGATGTAGTGAACATCAAAAGAAGAGTGAAGAATGTGGGAAGTCCAGGTACGTATGTTGCTCAAGTCGAATCACCGCCAGGAGTTTCAGTTTCAGTAAATCCAAATACTTTGAAATTCACTAATTCTGATGAAGAGAAGGATTTCAAAATTGTGTTGAGGAGGGTGCCAAATAATCAAACTAAAGAGAATGTGTTTGGAAAACTTGTGTGGTCTGATGGGAAGCATCGTGTTAGCAGTCCAATTTTTGTGACATTACAGATACAGTGA 1641 41.8 MMVEFLQTHFGTFQVLVNLQSLATLTQVVFGQNQKASVMKDMDLSQPDGREVVKVALTLVATAGGNFVEGVSFFGNGNGTAKGGSPKALVAAYRVCWPSMGSGGCFMADILAGIEAAISDGVDVLSISLGGNTEEFSDNLIAIGSFHAVKNGITVVCSAGNSGPFEGSVENVAPWIITVGASTIDRLFTTNVTLGDKRHFKGTSLSSKTMPAEKFYPIIRALDAKFNNSHDIDAALCLKGYTDGELIDQYIRSNKNPIAYITPVKTELGTKPAPIMASFSSRGPNPVELSILKPDITAPGVNILAAFSEENSITGLPYDKRRVLFNVLSGTSMACPHIAGIVGLLKTLYPKWSPAAIRSAIMTTAETEANDLNPILSSEKERANPLAYGAGHVQPNKAADPGLVYDLSTQDYLNFLCAHGYDKEQMKLFSNDTSFVCSKSFKVLDLNYPSISIYNLTSDVVNIKRRVKNVGSPGTYVAQVESPPGVSVSVNPNTLKFTNSDEEKDFKIVLRRVPNNQTKENVFGKLVWSDGKHRVSSPIFVTLQIQ 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7060935 7064195 - CmoCh16G010220.1 Cmo16g01022 400057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01022 546 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 60 240 - -
Cmo16g01022 546 Gene3D - 185 243 - -
Cmo16g01022 546 Gene3D - 244 268 - -
Cmo16g01022 546 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 241 543 - -
Cmo16g01022 546 Pfam Fibronectin type-III domain 445 541 IPR041469 -
Cmo16g01022 546 Pfam Subtilase family 75 373 IPR000209 GO:0006508|GO:0008236
Cmo16g01022 546 Gene3D - 416 544 - -
Cmo16g01022 546 ProSiteProfiles Serine proteases, subtilase domain profile. 1 399 - -
Cmo16g01022 546 ProSitePatterns Serine proteases, subtilase family, serine active site. 330 340 IPR023828 -
Cmo16g01022 546 SUPERFAMILY Subtilisin-like 79 403 IPR036852 GO:0004252|GO:0006508
Cmo16g01022 546 Gene3D Peptidase S8/S53 domain 61 184 IPR036852 GO:0004252|GO:0006508
Cmo16g01022 546 Gene3D Peptidase S8/S53 domain 269 412 IPR036852 GO:0004252|GO:0006508
Cmo16g01022 546 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 60 240 IPR045051 -
Cmo16g01022 546 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 241 543 IPR045051 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01022 Cmo-Chr16:7060935 Cmo16g01043 Cmo-Chr16:7274088 0 dispersed
Cmo16g01021 Cmo-Chr16:7060525 Cmo16g01022 Cmo-Chr16:7060935 2.06E-06 tandem
Cmo16g01022 Cmo-Chr16:7060935 Cmo16g01023 Cmo-Chr16:7091761 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01022 - - csv:105434448 650.203