Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01031 ATGGCGGATGCTGAAACGTTCGCTTTTCAGGCCGAGATTAATCAGCTTCTCAGTCTGATTATCAACACCTTTTACAGCAATAAGGAGATCTTTCTCCGGGAACTTATTAGCAACTCCTCTGATGCTCTAGATAAAATCCGGTTCGAGAGCTTGACCGACAAGAGTAAGCTAGATGCCCAGCCTGAACTCTTTATCCACATCATTCCTGATAAGGCAAACAATACATTGTCGATTATTGACAGTGGTATTGGCATGACCAAGGCTGATTTGGTGAACAATCTTGGAACCATTGCGCGATCTGGGACCAAGGAATTCATGGAAGCCATTGCAGCTGGTGCTGATGTGAGCATGATTGGGCAGTTTGGAGTGGGTTTCTACTCAGCATACCTTGTGGCTGAAAAGGTCATTGTTACCACAAAGCACAATGATGATGAGCAGTACGTATGGGAGTCCCAAGCTGGGGGTTCATTCACCGTCACCAGGGATACCTCTGGTGAGAATCTAGGCCGAGGTACAAAGATTACCCTGTATCTCAAGGAAGATCAACTCGAATATCTTGAGGAGCGTCGTCTCAAGGACTTGATTAAGAAGCACTCCGAGTTCATTAGCTACCCAATTTCTCTCTGGGTTGAGAAGACCACTGAGAAGGAAATCTCTGATGATGAGGACGAAGAGGAGAAGAAGGACGAGGAAGGCAAGGTTGAGGAAGTTGATGAAGAGAAGGAGAAGGAAGAAAAGAAGAAGAAAAAGATCAAGGAGGTTTCTCATGAGTGGTCTTTGGTGAACAAACAGAAGCCCATCTGGATGAGGAAGCCAGAGGAGATTACCAAGGAAGAATATGCTGCTTTCTACAAGAGCCTTACCAATGACTGGGAAGAGCACCTCGCTGTAAAACACTTCTCGGTGGAAGGTCAATTGGAATTCAAGGCTGTCCTCTTTGTCCCCAAGAGGGCTCCTTTTGATCTCTTTGACACAAAGAAGAAGCCTAACAACATTAAGTTGTATGTTAGACGTGTGTTTATCATGGACAACTGTGAGGAGTTGATTCCCGAGTACCTTGGTTTCGTGAAGGGCATAGTCGATTCTGAGGATCTTCCCCTCAACATTTCCAGAGAAATGCTGCAACAGAACAAAATCTTGAAGGTCATCCGCAAAAACTTGGTCAAGAAGTGCCTTGAGCTCTTCTTTGAGATTGCTGAGAACAAGGAAGACTACAACAAGTTCTACGAGGCCTTCTCCAAGAACTTGAAGCTTGGTATCCATGAGGATTCTCAGAATAGGCCTAAGCTTGCCGAGCTTCTCCGTTTCCACTCCACGAAAAGTGGTGACGAGTTGACCAGCCTGAAGGACTATGTGACCAGAATGAAGGAAGGTCAGAATGACATCTTTTACATCACTGGTGAAAGCAAGAAAGCTGTAGAGAACTCTCCTTTCCTTGAAAAGCTCAAGAAGAAGGGTTACGAAGTTCTGTTCATGGTCGACTCAATCGATGAGTACGCAGTCGGTCAACTGAAGGAATTTGAAGGGAAGAAGCTCGTATCAGCAACCAAGGAAGGTCTGAAACTCGAGGAGAGCGAAGATGAGAAGAAAAAGAAGGAAAGCTTGAAGGAGAAATTCGAGGGTCTTTGCAAGGTGATCAAGGATGTGTTGGGTGACAAGGTGGAGAAGGTCGTGGTGTCTGACCGGGTTGTTGATTCGCCGTGCTGTTTGGTAACTGGTGAATACGGTTGGACAGCGAACATGGAAAGGATCATGAAAGCTCAGGCGTTGAAGGACAACAGCATGGCTGGTTACATGTCTAGCAAGAAGACGATGGAAATCAACCCGGAGAACCCGATCATAGAAGAGCTGAGGAAGAGGTCTGACGAGGACAAGAACGACAAGTCCGTGAAGGACCTTGTTCTACTCCTGTTTGAGACTTCCCTGCTCACTTCTGGGTTCAGCCTGGATGACCCGAACACGTTTGGGAACAGGATCCACAGAATGTTGAAGCTGGGATTAAGCATCGACGAGGAAGAGGGTGAGGCGGATTCCGAGATGCCTCCTCTAGAAGATGCTGAGGCAGATGCTGAGGAGGGTAGCAAGATGGAGGAAGTTGATTAA 2103 46.55 MADAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKANNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAIAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDTSGENLGRGTKITLYLKEDQLEYLEERRLKDLIKKHSEFISYPISLWVEKTTEKEISDDEDEEEKKDEEGKVEEVDEEKEKEEKKKKKIKEVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRPKLAELLRFHSTKSGDELTSLKDYVTRMKEGQNDIFYITGESKKAVENSPFLEKLKKKGYEVLFMVDSIDEYAVGQLKEFEGKKLVSATKEGLKLEESEDEKKKKESLKEKFEGLCKVIKDVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALKDNSMAGYMSSKKTMEINPENPIIEELRKRSDEDKNDKSVKDLVLLLFETSLLTSGFSLDDPNTFGNRIHRMLKLGLSIDEEEGEADSEMPPLEDAEADAEEGSKMEEVD 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7195032 7198329 + CmoCh16G010310.1 Cmo16g01031 400066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01031 700 MobiDBLite consensus disorder prediction 670 700 - -
Cmo16g01031 700 Pfam Hsp90 protein 184 691 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cmo16g01031 700 Gene3D - 431 517 - -
Cmo16g01031 700 MobiDBLite consensus disorder prediction 217 238 - -
Cmo16g01031 700 Hamap Chaperone protein HtpG [htpG]. 2 664 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cmo16g01031 700 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 698 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cmo16g01031 700 SUPERFAMILY HSP90 C-terminal domain 542 663 IPR037196 -
Cmo16g01031 700 PANTHER HEAT SHOCK PROTEIN 81-2 1 698 - -
Cmo16g01031 700 PIRSF HSP90_HTPG 1 700 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cmo16g01031 700 SUPERFAMILY Ribosomal protein S5 domain 2-like 263 518 IPR020568 -
Cmo16g01031 700 MobiDBLite consensus disorder prediction 672 700 - -
Cmo16g01031 700 CDD HATPase_Hsp90-like 14 202 - -
Cmo16g01031 700 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5 213 IPR036890 -
Cmo16g01031 700 PRINTS 90kDa heat shock protein signature 5 25 IPR020575 -
Cmo16g01031 700 PRINTS 90kDa heat shock protein signature 26 48 IPR020575 -
Cmo16g01031 700 PRINTS 90kDa heat shock protein signature 75 92 IPR020575 -
Cmo16g01031 700 PRINTS 90kDa heat shock protein signature 93 110 IPR020575 -
Cmo16g01031 700 PRINTS 90kDa heat shock protein signature 118 140 IPR020575 -
Cmo16g01031 700 PRINTS 90kDa heat shock protein signature 170 187 IPR020575 -
Cmo16g01031 700 PRINTS 90kDa heat shock protein signature 188 206 IPR020575 -
Cmo16g01031 700 ProSitePatterns Heat shock hsp90 proteins family signature. 25 34 IPR019805 GO:0005524|GO:0006457|GO:0051082
Cmo16g01031 700 MobiDBLite consensus disorder prediction 215 246 - -
Cmo16g01031 700 Coils Coil 522 542 - -
Cmo16g01031 700 Gene3D - 262 430 - -
Cmo16g01031 700 SMART HKATPase_4 27 182 IPR003594 -
Cmo16g01031 700 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 181 IPR003594 -
Cmo16g01031 700 Coils Coil 220 257 - -
Cmo16g01031 700 Gene3D - 518 667 IPR037196 -
Cmo16g01031 700 Gene3D - 2 229 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01031 K04079 HSP90A, htpG; molecular chaperone HtpG - csv:101221822 1193.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00105 Cmo-Chr16:480853 Cmo16g01031 Cmo-Chr16:7195032 0 dispersed
Cmo16g01031 Cmo-Chr16:7195032 Cmo20g00675 Cmo-Chr20:3297642 1.97E-21 dispersed
Cmo11g01241 Cmo-Chr11:7760957 Cmo16g01031 Cmo-Chr16:7195032 0 transposed
Cmo16g01031 Cmo-Chr16:7195032 Cmo06g00716 Cmo-Chr6:3650095 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g722 . . . . Bpe09g00109 Bpe08g01086 . . Cmo16g01031 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00880 Bda05g00671 Bda12g00984 . Bpe03g00745 Bma07g01240 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000587 3 3 3 2 4 2 5 5 4 3 3 3 4 4 3 4 3 7 3 3 3 4 5 0 4 3 1 4 4 3 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01031 Cmo_Chr16 FPKM 3.177148 3.876444 0.776746 1.029697 5.59048 5.915351 5.984854 0.844302 0.640106 0.568679