Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01037 ATGTCTGTTTCTATTGATTTTCATGTTCTTGGTGGTTTCTGGGGATTCGTCGAGATTTTCGAGGTCGGGATCGATCGAGTAGTAATGGGGAGGACTGATGATAATGTTGCTCTTATTGGGGATTGGGTGCCTCCAAGTCCCAGCCCAAGAACCTTCTTCTCAGCAATGCAAATGCTAGAGGAGGATGTTGTTGGTTCTAGACCTACAATGGACACTACCAGCACTGATAAACCCGAAAAGATCTTTCTCGGGTCTCGAGAACACACGGTGTCTGAAAACGCCATTGCAAGAGGCGGGATCCCGGGTGTCAACTCTGGCGATCGGTCGATGGAGTTCGGTACGGTATCAGAGCAGAAATTCCGTGGTGGACTTGTGGAAAGGATTGCAGCAAGAGCTGGATTTAATGCTCCAAGATTGAATACAGAGAACATTAGATCAACAGAGGAAGTGAAGTCTCCTTACTTGACAATACCGCCTGGTTTGAGTCCAACTACATTGCTTGATTCTCCAGTTTTTCTTTCAAATTCATTGGCTCAGCAATCTCCCACAACTGGGAAGTTCCCGTTTGTAGCGAACGTTAGTTATCGAAGCTCGACGATGATGTTGGAGGCGAACAATCGAGGCAACGACAATCCGTTTGATGATAACAGTTCATCGTTTGCTTTCAGACCGAGGTTGGAATCAGGATCATCATTTTTTCATGGTGCAGCAAGCAAAGTAATTTCACTTCCACAATCTTGTCCAAGAAGCGTAGACCCGGGTCTACGCTCAGAAAATTCTTATCAACCCGAAAATAGAATCAATCATCATCCTCAAATGGGGCTCTCTACGTCGTGCACGGAGAGGGACGATGTGGGTAAGAACGTGTTGGATGATCAAAGACCCTATGATTCTCTGTGTGGTGGTGGTGGTGGTGAACATTCGTCACCGCTCGATGAGCAACCGGATGAAGGGGAGCAACGAGGCACTGTGGATTCGATGGCCAGTGGTGGTTGCGGTGCGCCCTCGGAGGATGGATATAACTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGCGAGTATCCTCGGAGTTATTACAAGTGCACACATCCGAACTGTCAGGTCAAGAAGAAGGTCGAGCGATCTCATGAAGGCCATATAACAGAGATCATCTACAAGGGAACACATAACCACGTAAAACCCTCACCGAATCGACGAGCATCAGATTCCCATATCAATATGCAACTAGACATCCCTGTACAAGCAGGCCAACAGAATGCTGAAGTTCCCCTGTGGGAAGATTCACAAAAAGGGACTCCTGATTGGATGCATAGCAACCTTGAGGTGAGTTCTTCAGCATCCTTGGGTCCTGAATATGGCAATCATATTGAAACAGTTGAGGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGAGGAACACATGGAAGTATAACAATGGGATATGAGGGGGAAGGAGATGAATCCGAGTCGAAGAAGAGGAAACTCGACGCCTATGTAACGGAAATGAGTGGGGCTACTAGAGCTATCCGTGAGCCTAGAGTTGTTGTTCAGACTACTAGTGAAGTAGATATTCTCGACGATGGCTATCGTTGGCGTAAATACGGACAGAAGGTGGTGAAGGGAAATCCGAATCCTAGGTACATCAAATTCCATGTTTGTGTGTGCTCTCGTCCTGTCACTAAGAGTTACTACAAGTGCACGAATCCTGGCTGCACGGTGAGGAAGCATGTCGAGCGAGCGTCGCATGACCTGAAGTCAGTGATAACCACATATGAAGGAAAGCACAATCACGATGTTCCTGCTGCTCGAAACAGCAGCCACATCGGTTCATGCACATCCAGTCCAGTAACGGGTCAAACCTCGACCGCTACTCATCATGCTCACAGGCCAGGGCCACCGCAGCCTCAAAACAACATGCCAAGATTCGAAAGGCCAGCCTTCGGCCTTGCTGGAAGACAACCGATGGGCACTGCCCATGCCCATGGCTTTGGTTTTGGTATGAACCAACCTGGACTGAGAAATCTAAACCTGACCATGACCATGGCATCAGCTGGTCAAGCCAAGCTTCCTGTTCTACCAATGCATCCATACTTAGCACAAGCACACAATGTTCATGAAATGGGTTTGTTGTTGCCTAAAGGTGAGCCCAATCTAGAATCTACATCTGATCTTGGCTTGAACTTTTCCAATGGTTCAACGGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGGCCTGAGATACCAAATCAGATCATTGTAGTTCAACATTTGAGCTCTGAATATGTTGCACAGCTTCTTAATGACCATCTGCAACACTCTCCTGGACAACCTTCTCAGTTTCCCTTTGATTCAAGACCTCTCTGCACATAA 2394 46.91 MSVSIDFHVLGGFWGFVEIFEVGIDRVVMGRTDDNVALIGDWVPPSPSPRTFFSAMQMLEEDVVGSRPTMDTTSTDKPEKIFLGSREHTVSENAIARGGIPGVNSGDRSMEFGTVSEQKFRGGLVERIAARAGFNAPRLNTENIRSTEEVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFPFVANVSYRSSTMMLEANNRGNDNPFDDNSSSFAFRPRLESGSSFFHGAASKVISLPQSCPRSVDPGLRSENSYQPENRINHHPQMGLSTSCTERDDVGKNVLDDQRPYDSLCGGGGGEHSSPLDEQPDEGEQRGTVDSMASGGCGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGTHNHVKPSPNRRASDSHINMQLDIPVQAGQQNAEVPLWEDSQKGTPDWMHSNLEVSSSASLGPEYGNHIETVEAIDASSTFSNDEDEDDRGTHGSITMGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRYIKFHVCVCSRPVTKSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHIGSCTSSPVTGQTSTATHHAHRPGPPQPQNNMPRFERPAFGLAGRQPMGTAHAHGFGFGMNQPGLRNLNLTMTMASAGQAKLPVLPMHPYLAQAHNVHEMGLLLPKGEPNLESTSDLGLNFSNGSTVYQQIMSRLPLGPEIPNQIIVVQHLSSEYVAQLLNDHLQHSPGQPSQFPFDSRPLCT 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7226008 7229303 + CmoCh16G010370.1 Cmo16g01037 400072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01037 797 MobiDBLite consensus disorder prediction 465 500 - -
Cmo16g01037 797 MobiDBLite consensus disorder prediction 247 343 - -
Cmo16g01037 797 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 323 704 IPR044810 GO:0003700
Cmo16g01037 797 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 107 238 IPR044810 GO:0003700
Cmo16g01037 797 SUPERFAMILY WRKY DNA-binding domain 335 395 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo16g01037 797 Gene3D WRKY domain 329 396 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo16g01037 797 Gene3D WRKY domain 519 600 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo16g01037 797 PANTHER BNAA03G10980D PROTEIN 323 704 - -
Cmo16g01037 797 PANTHER BNAA03G10980D PROTEIN 107 238 - -
Cmo16g01037 797 MobiDBLite consensus disorder prediction 610 634 - -
Cmo16g01037 797 ProSiteProfiles WRKY domain profile. 337 395 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo16g01037 797 ProSiteProfiles WRKY domain profile. 527 607 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo16g01037 797 MobiDBLite consensus disorder prediction 252 283 - -
Cmo16g01037 797 SUPERFAMILY WRKY DNA-binding domain 524 607 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo16g01037 797 SMART WRKY_cls 336 394 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo16g01037 797 SMART WRKY_cls 532 606 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo16g01037 797 MobiDBLite consensus disorder prediction 604 648 - -
Cmo16g01037 797 MobiDBLite consensus disorder prediction 778 797 - -
Cmo16g01037 797 Pfam WRKY DNA -binding domain 337 392 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo16g01037 797 Pfam WRKY DNA -binding domain 533 604 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00737 Cmo-Chr1:3806759 Cmo16g01037 Cmo-Chr16:7226008 6.97E-93 dispersed
Cmo06g00665 Cmo-Chr6:3368431 Cmo16g01037 Cmo-Chr16:7226008 4.83E-90 dispersed
Cmo10g00863 Cmo-Chr10:4088255 Cmo16g01037 Cmo-Chr16:7226008 1.79E-105 dispersed
Cmo11g00960 Cmo-Chr11:5051171 Cmo16g01037 Cmo-Chr16:7226008 2.48E-10 dispersed
Cmo11g00961 Cmo-Chr11:5053157 Cmo16g01037 Cmo-Chr16:7226008 2.13E-95 dispersed
Cmo15g00258 Cmo-Chr15:1248796 Cmo16g01037 Cmo-Chr16:7226008 5.48E-13 dispersed
Cmo16g00982 Cmo-Chr16:6726015 Cmo16g01037 Cmo-Chr16:7226008 9.94E-14 dispersed
Cmo18g01145 Cmo-Chr18:11701929 Cmo16g01037 Cmo-Chr16:7226008 3.43E-73 dispersed
Cmo16g01037 Cmo-Chr16:7226008 Cmo06g00719 Cmo-Chr6:3663619 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11320 PF03106 WRKY 2.30E-16 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01037 K18835 - csv:101207853 1101.27