Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01046 ATGGCGATGCCTTCGCGGGAAGCAATTGATACTTTCATCGGCGTTACCGGAGCATCCGAAGCGATCGCCGTTCAGAGCCTCGAGGCACATGGTGCTGATCTCAATGCTGCTGTGAATGCTTATTTCAATGAAGGAGATAGAAGTTCGTCCGTAAATGCACGTCAAACCTCTGTTTCTGGTGAATATGATTTCATGGACATTGATGATCCAGTTGAAGTTGAACCCCATGGTCCTCCTCGGTCTCTTCTATCTACAGCTAGAGAGGGAATGATTCCATTTTCGTTACTTGATCGAAATCTCCGCCAGGGGTTCTTTGATCGCCCCTCTGATTTTACAAGTTCTGCTCCAGTTGTGACTCATCCAAGAGAGGTGAGGGAGATTCCCATAGAATTTACAGATGGTAATCGACCATCTGGCCAATCTGGCCATGAGCCGACAATTGAGGATGTTACTGGGACTGTAGATGCCCATGTTCCAGCGGTTCGTGGAACTGTAGTAATTGATGATAATGAAGATGAAGAACCTCCAGTTACTTCTATGGCACGTGCACCAGATTTAGAGAATCGCGCTGTTTCAAGTATCATATCTCGTGACAGAAATGCTATACCCGGTGCCTTTGAAAGTAATGAATTCCAAGACAGAAATGACATTGAAGAAGAAATGATTCGTGCTGCGATTGAAGCTTCAAAGAAGGATGTTGTGCAAGCTTATCCAAGCGATCCCTTAACTACACACACTGATTTAAGCAATCTTAGGACTGAAGAACATCTTTCTCCCTCGAATAATTCTGAAGTTTCACATGCAGCTTCATCTATCAAGCCAGATGAAGCTTTCCCCGAGCGAGGGGAGAACATTGGAGGATCAAAAATAGCAGATTCTAGGTCAACTGAGGTGGAGATGAGGAAAGGCAGAGCACTAAATGGAAGGATGGAAGCAGGAAGCACGTCTTTTCAAGATGAGGTTGAAGACCTAGAGCAAGATAATTTAGTTAAGCATCGGTCCAAACGCAAGTCCTCTGGCTGTGTTGAGCCTGCAAAGGGGGTTGAAGTTGATGTAAGCCTTGCATCTAGTCCCAAGCATTCTGGTGCTGGTAATAATTCACAGCACAATGGGAGTATCTTTCGTTCTGATGAGTGGGGTGGAATTTCTTCAGAGGAGCATGACGAAGCAGTCATGCTTGAGGCGGCCATGTTTGGTGGAGGTTCTGAAGGAAGTTCATATAATTTTCCATCTGCACCTCATGAGTTCATGAGAAATCAAGGTTCATATATGCAGCCAGCCCCTCGCCTTCCTTCTCCCTCTTTAGTAGCTCAGCGTTTGATTAGGGAACAACAGGATGATGAGTATCTTGCAGCCTTACAAGCTGACAAAGAAAAAGAACTGAAGGCAATGGCAGAAGCTGCTGCTGTTCTTGAAAAAGAAAAACAAAGAGAGGAGGAATCCCGTCAGAAATTGGATGCTGAGAAGGAACTTGAAAGACACTTGGCAGAAATAGAAGCTTCTCTTCCTAGTGAACCAAGAACAGATGATGAGAATGCTGTGACACTATTAGTGCGCATGCCCGATGGCAGTCGCCGTGGTCGTCGATTTCTCAAAACTGATAAGCTACAGTGTCTCTTGGACTTCATTGATATTGGTAGAGTTGTGAAGCCTGGCTCCTACAGATTGGTGAGGCCATATCCTCGAAAAGCTTTTGGAGATGGGGAGAGTTCTTTAACGTTGAATGAACTTGGACTTAACAGCAAACAAGAAGCCTTATTTCTGGAGTTGATTTAA 1776 44.88 MAMPSREAIDTFIGVTGASEAIAVQSLEAHGADLNAAVNAYFNEGDRSSSVNARQTSVSGEYDFMDIDDPVEVEPHGPPRSLLSTAREGMIPFSLLDRNLRQGFFDRPSDFTSSAPVVTHPREVREIPIEFTDGNRPSGQSGHEPTIEDVTGTVDAHVPAVRGTVVIDDNEDEEPPVTSMARAPDLENRAVSSIISRDRNAIPGAFESNEFQDRNDIEEEMIRAAIEASKKDVVQAYPSDPLTTHTDLSNLRTEEHLSPSNNSEVSHAASSIKPDEAFPERGENIGGSKIADSRSTEVEMRKGRALNGRMEAGSTSFQDEVEDLEQDNLVKHRSKRKSSGCVEPAKGVEVDVSLASSPKHSGAGNNSQHNGSIFRSDEWGGISSEEHDEAVMLEAAMFGGGSEGSSYNFPSAPHEFMRNQGSYMQPAPRLPSPSLVAQRLIREQQDDEYLAALQADKEKELKAMAEAAAVLEKEKQREEESRQKLDAEKELERHLAEIEASLPSEPRTDDENAVTLLVRMPDGSRRGRRFLKTDKLQCLLDFIDIGRVVKPGSYRLVRPYPRKAFGDGESSLTLNELGLNSKQEALFLELI 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7318961 7324320 + CmoCh16G010460.1 Cmo16g01046 400081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01046 591 CDD UBX 515 589 - -
Cmo16g01046 591 MobiDBLite consensus disorder prediction 241 301 - -
Cmo16g01046 591 MobiDBLite consensus disorder prediction 241 269 - -
Cmo16g01046 591 ProSiteProfiles UBX domain profile. 509 587 IPR001012 GO:0005515
Cmo16g01046 591 SUPERFAMILY Ubiquitin-like 474 584 IPR029071 -
Cmo16g01046 591 Pfam UBX domain 510 589 IPR001012 GO:0005515
Cmo16g01046 591 PANTHER FAS-ASSOCIATED PROTEIN 1 591 - -
Cmo16g01046 591 PANTHER OS09G0525600 PROTEIN 1 591 - -
Cmo16g01046 591 Pfam UBA-like domain 6 47 - -
Cmo16g01046 591 SUPERFAMILY UBA-like 5 44 IPR009060 GO:0005515
Cmo16g01046 591 Coils Coil 454 497 - -
Cmo16g01046 591 SMART ubx_3 506 590 IPR001012 GO:0005515
Cmo16g01046 591 CDD UBA_Ubx1_like 6 42 - -
Cmo16g01046 591 Gene3D - 5 45 - -
Cmo16g01046 591 Gene3D - 510 590 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01046 - - - csv:101208817 945.651
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00724 Cmo16g01046 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01132 Cmo-Chr6:8696717 Cmo16g01046 Cmo-Chr16:7318961 2.84E-13 dispersed
Cmo13g00906 Cmo-Chr13:8053079 Cmo16g01046 Cmo-Chr16:7318961 6.33E-14 dispersed
Cmo15g01375 Cmo-Chr15:9365759 Cmo16g01046 Cmo-Chr16:7318961 1.78E-17 dispersed
Cmo08g00088 Cmo-Chr8:449286 Cmo16g01046 Cmo-Chr16:7318961 1.32E-07 transposed
Cmo16g01046 Cmo-Chr16:7318961 Cmo06g00724 Cmo-Chr6:3705325 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g369 . . . . . . . . Cmo06g00724 Cmo16g01046 . . . . . . . . . . . . . . Cla10g00353 . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g01003 Car06g00629 . Cpe08g00807 . . . . . . . . . . . . . . . . . Chy06g01938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004108 2 1 2 2 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01046 Cmo_Chr16 FPKM 21.55102 26.495787 32.389534 30.748545 19.838093 16.157995 18.658991 45.516167 42.922348 43.207008