Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01047 ATGTTGGCTGGGTGTTCTAGTTCAACATTGCTCTCGCCAAGGAATCATTTGAGAAGTGAAGTAGTACAGTCGCCGTTTCAAGCTTGCCTTTTGCAGTTTCCCCCTTCAATGAGCGCGCAGAGATTGGATTTGCCCTGCAGCTTTTCCCGCTCGAAAGACGCCTCTTCCGTCGCACGATCCCCGTCGATCCGCCCGGTTGCTCTCTCGGTCGAGAAGCAGAACATTAGGCTTCCGCCGCTATCCGCTACTAACCAGAAAATCAAGCAAGAGTTTTGGAATGGGAAAGGTAAGAACTTGAAGAGAATTGCAGAGCAAATTGGTATTGATGATGATGAATCTTCCATTAGCAATGCCAAGAGGAAGAGAGCGTGCAGAGACGACGTAGGAGACGGGCTAATTCTGAGCCAATTCGGCGGTGGGGTTCGGAGTTTCTGGTATCATCAACAGCCTGATGGAGATGAAGGACTCTGCTTTCTTCCTGGAAGTTCAATGTCGCCGTTTATGTTGGAGATCGCTGATTTGGGAGAAGGAAATGATGGAGAAAGCAGCCATGCGAAGGCACAGGACGGCTCGGACTCGGTCTCCGGCTCAGATTCGGGGTCGAGTTCATCATCAAGAAGTGAGAGATTTGCAGCAGCAGAAGCAGGGCCAGAAATTGGCAATGGGAGCTCAAGAAATCCTTCATATCATCACCATCAAGGCTCTGGCTTAGCAAATGAGAGAGGAGGAGAAGAATCATTTGAGCTGTTAAGTGTTCTAATGGCATGTGTGGAAGCAATAAGATCAAAGAACATTACTTTGATTAACCATTTGATAGAAAAGCTTGGGAGCCAAGCTTCACCAAGGGGTTCATCACCCATTACACGTTTGATTGCATATTACACAGAGGCTTTAGCAGTAAGAGTGAGCAGAGTTTGGCCACAGGTCTTTCACGTAAGGCCGCCGAGGGAATATGATCGGATCGACGACGATACAGGAACAGCGTTACGGCTTCTAAACGAGGTGAGTCCGATCCCGAAATTCATCTACTTCACAGCAAATGAGATGTTGCTGAGAGCATTTGAAGGGAAAGACAAGGTTCACATCATAGACTTTGACATAAAGCAAGGGCTGCAATGGCCGAGCTTGTTTCAGAGTTTGGCATCTCGAGCGAACCCTCCTAGTCATGTCCGAATCACCGGGATCGGTGAATCGAAGCAGGAATTGAACGAAACGGGAGATAGGCTGGCGGGGTTTGCCGAGGCATTGAGGTTGCCGTTCGAGTTCCACGCAGTGGTGGACCGGTTGGAGGATGTGAGACTGTGGATGCTTCGTGTCAAGGAGAATGAGAGTGTAGGAGTGAATTGCATTCTCCAACTGCACAAGACTCTGTATGATAATAACATCAATGGTGGGGGAGGAGCATTGAAGGACTTTTTGGGGCTTATCAGAAGCACGAACCCGAGCATTGTTGTGATGGGCGAGCAAGAAGCCGAGCACAACGACCCGAGATTGGAGACTCGAGTTGCAGCCACACTTAAGTACTACGGTGCGATATTCGACTCCCTCGACACTAGCCTTCCACCGGACAGCTCGGGGAGGTTGAAAATCGAGGAGATGTTTGGGAGGGAGATAAGGAACATGATAGGATGTGAAGGAAGGGAGAGGTATGAAAGGCATGTTGGATTTGAGAAATGGAAGAAAGTGATGGAGAAGCAAGGAGGGCTGCGATGCGTCGGGATTCGAGACGATCGAGAGCTTCTTCAGAGCCAAATCCTGTTGAAAATGTACTCATCAGCTGATGGATTCAAAGTGAGAAAGATTGAAGAAGAAGGAGGAGCTCAAGCAGTTTGCTTAGCTTGGGAAGAACAGCCACTTTACAGTGTGTCAGGATGGACAGCAGCAGAAGTATCTTGA 1896 48.79 MLAGCSSSTLLSPRNHLRSEVVQSPFQACLLQFPPSMSAQRLDLPCSFSRSKDASSVARSPSIRPVALSVEKQNIRLPPLSATNQKIKQEFWNGKGKNLKRIAEQIGIDDDESSISNAKRKRACRDDVGDGLILSQFGGGVRSFWYHQQPDGDEGLCFLPGSSMSPFMLEIADLGEGNDGESSHAKAQDGSDSVSGSDSGSSSSSRSERFAAAEAGPEIGNGSSRNPSYHHHQGSGLANERGGEESFELLSVLMACVEAIRSKNITLINHLIEKLGSQASPRGSSPITRLIAYYTEALAVRVSRVWPQVFHVRPPREYDRIDDDTGTALRLLNEVSPIPKFIYFTANEMLLRAFEGKDKVHIIDFDIKQGLQWPSLFQSLASRANPPSHVRITGIGESKQELNETGDRLAGFAEALRLPFEFHAVVDRLEDVRLWMLRVKENESVGVNCILQLHKTLYDNNINGGGGALKDFLGLIRSTNPSIVVMGEQEAEHNDPRLETRVAATLKYYGAIFDSLDTSLPPDSSGRLKIEEMFGREIRNMIGCEGRERYERHVGFEKWKKVMEKQGGLRCVGIRDDRELLQSQILLKMYSSADGFKVRKIEEEGGAQAVCLAWEEQPLYSVSGWTAAEVS 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7325518 7327413 - CmoCh16G010470.1 Cmo16g01047 400082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01047 631 ProSiteProfiles GRAS family profile. 240 626 IPR005202 -
Cmo16g01047 631 PANTHER SCARECROW-LIKE PROTEIN 28 6 628 IPR030027 -
Cmo16g01047 631 Pfam GRAS domain family 250 626 IPR005202 -
Cmo16g01047 631 MobiDBLite consensus disorder prediction 187 209 - -
Cmo16g01047 631 MobiDBLite consensus disorder prediction 174 240 - -
Cmo16g01047 631 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 628 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01047 Cmo-Chr16:7325518 Cmo04g03104 Cmo-Chr4:21588625 2.68E-76 dispersed
Cmo16g01047 Cmo-Chr16:7325518 Cmo16g01054 Cmo-Chr16:7391292 5.76E-40 proximal
Cmo16g01047 Cmo-Chr16:7325518 Cmo06g00725 Cmo-Chr6:3712481 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11322 PF03514 GRAS 4.60E-120 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01047 - - cmo:103490990 977.622