Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01051 ATGGCCTCTACCTCCTCCAATAGACATGGCAACTACAAGGGAGTCCGCTGCCGGAGTGGCAAATGGGTGTCGGAGATTCGTGAGCCACGTAAGACTACTCGAATATGGCTTGGCACGTATCCAACGTCGGAAATGGCCGCTGCTGCGTACGACGTGGCTGCGCTGGCTCTCAAGGGTAGCAATGCTGTTCTAAACTTCCCGGACTCGATTCGCTCCTACCCAATTCCGGCTTCCAAATCCCCAGCTGATATTCGTCTCGCTGCCGCTGCTGCTGCTGCGACGAAAAAGGTGGATCAAGGAGAAAGTAATAACAATAGCTGCCACCAGTCTCCACCGTCCGATGAGTTCGTTGACGAAGAGGCACTGTTTGGAATGCCCAATTTGCTGCACGACATGGCGGAGGGAATGCTGTTGCCACCGCCGCGAATGAGCGACTCGCCGTCATCACACGACTGCTACTCATGGAACTCCACTGGAGATGAAAATCTTTGGAGCTACCATTAG 504 54.17 MASTSSNRHGNYKGVRCRSGKWVSEIREPRKTTRIWLGTYPTSEMAAAAYDVAALALKGSNAVLNFPDSIRSYPIPASKSPADIRLAAAAAAATKKVDQGESNNNSCHQSPPSDEFVDEEALFGMPNLLHDMAEGMLLPPPRMSDSPSSHDCYSWNSTGDENLWSYH 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7356312 7356815 + CmoCh16G010510.1 Cmo16g01051 400086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01051 167 SMART rav1_2 11 73 IPR001471 GO:0003700|GO:0006355
Cmo16g01051 167 SUPERFAMILY DNA-binding domain 12 69 IPR016177 GO:0003677
Cmo16g01051 167 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Cmo16g01051 167 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700|GO:0006355
Cmo16g01051 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 5 166 - -
Cmo16g01051 167 PRINTS Ethylene responsive element binding protein signature 12 23 IPR001471 GO:0003700|GO:0006355
Cmo16g01051 167 PRINTS Ethylene responsive element binding protein signature 49 69 IPR001471 GO:0003700|GO:0006355
Cmo16g01051 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 166 - -
Cmo16g01051 167 MobiDBLite consensus disorder prediction 96 115 - -
Cmo16g01051 167 Gene3D AP2/ERF domain 11 68 IPR036955 GO:0003700|GO:0006355
Cmo16g01051 167 MobiDBLite consensus disorder prediction 97 112 - -
Cmo16g01051 167 Pfam AP2 domain 11 59 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00728 Cmo-Chr6:3732966 Cmo16g01051 Cmo-Chr16:7356312 4.40E-82 dispersed
Cmo15g01261 Cmo-Chr15:8654286 Cmo16g01051 Cmo-Chr16:7356312 2.31E-32 dispersed
Cmo15g01262 Cmo-Chr15:8661091 Cmo16g01051 Cmo-Chr16:7356312 1.36E-53 dispersed
Cmo16g01051 Cmo-Chr16:7356312 Cmo18g01239 Cmo-Chr18:12227522 8.40E-47 dispersed
Cmo16g01051 Cmo-Chr16:7356312 Cmo02g01523 Cmo-Chr2:8862933 1.80E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11323 PF00847 AP2 1.20E-11 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01051 - - csv:101202953 268.855