Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g01051 | ATGGCCTCTACCTCCTCCAATAGACATGGCAACTACAAGGGAGTCCGCTGCCGGAGTGGCAAATGGGTGTCGGAGATTCGTGAGCCACGTAAGACTACTCGAATATGGCTTGGCACGTATCCAACGTCGGAAATGGCCGCTGCTGCGTACGACGTGGCTGCGCTGGCTCTCAAGGGTAGCAATGCTGTTCTAAACTTCCCGGACTCGATTCGCTCCTACCCAATTCCGGCTTCCAAATCCCCAGCTGATATTCGTCTCGCTGCCGCTGCTGCTGCTGCGACGAAAAAGGTGGATCAAGGAGAAAGTAATAACAATAGCTGCCACCAGTCTCCACCGTCCGATGAGTTCGTTGACGAAGAGGCACTGTTTGGAATGCCCAATTTGCTGCACGACATGGCGGAGGGAATGCTGTTGCCACCGCCGCGAATGAGCGACTCGCCGTCATCACACGACTGCTACTCATGGAACTCCACTGGAGATGAAAATCTTTGGAGCTACCATTAG | 504 | 54.17 | MASTSSNRHGNYKGVRCRSGKWVSEIREPRKTTRIWLGTYPTSEMAAAAYDVAALALKGSNAVLNFPDSIRSYPIPASKSPADIRLAAAAAAATKKVDQGESNNNSCHQSPPSDEFVDEEALFGMPNLLHDMAEGMLLPPPRMSDSPSSHDCYSWNSTGDENLWSYH | 167 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 7356312 | 7356815 | + | CmoCh16G010510.1 | Cmo16g01051 | 400086 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g01051 | 167 | SMART | rav1_2 | 11 | 73 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g01051 | 167 | SUPERFAMILY | DNA-binding domain | 12 | 69 | IPR016177 | GO:0003677 | |
Cmo16g01051 | 167 | CDD | AP2 | 11 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g01051 | 167 | ProSiteProfiles | AP2/ERF domain profile. | 11 | 67 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g01051 | 167 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 | 5 | 166 | - | - | |
Cmo16g01051 | 167 | PRINTS | Ethylene responsive element binding protein signature | 12 | 23 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g01051 | 167 | PRINTS | Ethylene responsive element binding protein signature | 49 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g01051 | 167 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 5 | 166 | - | - | |
Cmo16g01051 | 167 | MobiDBLite | consensus disorder prediction | 96 | 115 | - | - | |
Cmo16g01051 | 167 | Gene3D | AP2/ERF domain | 11 | 68 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo16g01051 | 167 | MobiDBLite | consensus disorder prediction | 97 | 112 | - | - | |
Cmo16g01051 | 167 | Pfam | AP2 domain | 11 | 59 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00728 | Cmo-Chr6:3732966 | Cmo16g01051 | Cmo-Chr16:7356312 | 4.40E-82 | dispersed | |
Cmo15g01261 | Cmo-Chr15:8654286 | Cmo16g01051 | Cmo-Chr16:7356312 | 2.31E-32 | dispersed | |
Cmo15g01262 | Cmo-Chr15:8661091 | Cmo16g01051 | Cmo-Chr16:7356312 | 1.36E-53 | dispersed | |
Cmo16g01051 | Cmo-Chr16:7356312 | Cmo18g01239 | Cmo-Chr18:12227522 | 8.40E-47 | dispersed | |
Cmo16g01051 | Cmo-Chr16:7356312 | Cmo02g01523 | Cmo-Chr2:8862933 | 1.80E-60 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11323 | PF00847 | AP2 | 1.20E-11 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g01051 | - | - | csv:101202953 | 268.855 |