Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01053 ATGGGTTCTTGCCATTCGTCTCTAAAAGGGCGGCAGAGCAGAGGCGGCGCTGATTCTGCCGCGGCGGCGGAATCCCCAATAGCTTCTACAATCAACTCATTTTCTTCTGCTTCTTCGTTTTTGTACTCTAAGACCAGTAAGCCGCGTTGGTGGAAGAGCAATTCCACTAAAACTTTTGGCGTTGGGGTTTGTTCAGAGAAGGTTCATGAATTTGAGGTTCCGGGGCGGATTTGTTCAAATGGGTCATCGAGAATCGCTTGTTTGTATACGCAACAGGGGAAGAAAGGGGTTAATCAAGATGCCATGGTTGTGCATGAGGCTTTCGGTTCGAAAAGAGATACAATATTTTGTGGGGTATTTGATGGACATGGTCCTTTCGGACATATGGTTGCGAAAAAAGTTCGGGATACCCTTCCTCTAATCCTATGTACACAATGGACATCTAAATCAAACGAAGATCAAAGCAGTGTCGTTAAGACGAACCATTCCAGAAGTTCAAATTCTGAAAATTCTGTTGCTCTGGACGGCGATGAAGATTCTTACAAGTCACTGGAGGCCGAGGAAAACGAAAAATTCCCCAAGATGTTTCTGCCACTCAAAGTATCTTTACTGAAGTCCTTCAAATTAATGGATAAGGAGTTGAAACTGCATCCGAAAATTGATTGTTTTTGCAGTGGATCGACGGCTGTGACTCTAATAAAGCAGGGTCAGAACCTTATACTTGGAAATGTCGGTGACTCGAGAGCGGTGCTGGCTACAATAGACGACGATAACTCTTTGATTCCAGTTCAACTAACGGTGGACTTGAAACCCGACCTTCCTGCTGAAGCTGCTAGGATCCAGCAATGCAAAGGACGGGTCTTCGCTTTACAGGACGAGCCTGAAGTTGCACGAGTATGGTTGCCTAATAACGATTCACCTGGTTTGGCAATGGCGAGAGCTTTCGGAGACTTTTGTCTGAAGGATTTCGGTCTAATTTCTGTTCCCGACGTTTATTATCGTCACCTTACGGCGAGAGATCAGTTCGTAATTCTTGCCACTGATGGGGTTTGGGATGTTCTTTCGAATAAAGAAGCTATTGAAATTGTTGCTTCAGCCCCATCTCGCGAAACATCAGCCAGGGCTCTTGTCGACTGCGCCGTTCGTGCATGGAGGTTGAAATATCCTACATCCAAGAACGACGATTGTGCTGTTGTATGTCTCTTTCTCGAGTACGAGCCTGAAATAGAAGAAAACACAGCCACTAAACCAGTGGAAGAAGATCTAGCCCCGCCGAGCGAGGACACGAAAGATATTGAAGTCGATTCTAACGATCATGGCACGATTGGAAGCTCTAATGAGATTGTACCTGTCGACGACACAACAGACGAGAAGGTTGGAGGTGGTGGTCGAAACCCGTCGAAGAGAAGCTTAGCGGAGTGCATTTCGAATGAAGAGGAGGAATGGTCAGCATTGGAGGGTGTTACGAGAGTGAATAGTCTCCTAAGCCTTCCGAGGTTCCTGTCGGGTGACAAAAGGTCAGGCAGCTGGAGGAAGTGGCTATGA 1545 46.54 MGSCHSSLKGRQSRGGADSAAAAESPIASTINSFSSASSFLYSKTSKPRWWKSNSTKTFGVGVCSEKVHEFEVPGRICSNGSSRIACLYTQQGKKGVNQDAMVVHEAFGSKRDTIFCGVFDGHGPFGHMVAKKVRDTLPLILCTQWTSKSNEDQSSVVKTNHSRSSNSENSVALDGDEDSYKSLEAEENEKFPKMFLPLKVSLLKSFKLMDKELKLHPKIDCFCSGSTAVTLIKQGQNLILGNVGDSRAVLATIDDDNSLIPVQLTVDLKPDLPAEAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDVYYRHLTARDQFVILATDGVWDVLSNKEAIEIVASAPSRETSARALVDCAVRAWRLKYPTSKNDDCAVVCLFLEYEPEIEENTATKPVEEDLAPPSEDTKDIEVDSNDHGTIGSSNEIVPVDDTTDEKVGGGGRNPSKRSLAECISNEEEEWSALEGVTRVNSLLSLPRFLSGDKRSGSWRKWL 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7378460 7385155 + CmoCh16G010530.1 Cmo16g01053 400088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01053 514 Gene3D - 78 405 IPR036457 -
Cmo16g01053 514 MobiDBLite consensus disorder prediction 154 174 - -
Cmo16g01053 514 ProSiteProfiles PPM-type phosphatase domain profile. 85 403 IPR001932 -
Cmo16g01053 514 MobiDBLite consensus disorder prediction 413 471 - -
Cmo16g01053 514 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 1 498 - -
Cmo16g01053 514 SUPERFAMILY PP2C-like 79 404 IPR036457 -
Cmo16g01053 514 MobiDBLite consensus disorder prediction 413 437 - -
Cmo16g01053 514 PANTHER ALPHABET, ISOFORM E-RELATED 1 498 - -
Cmo16g01053 514 CDD PP2Cc 84 403 IPR001932 -
Cmo16g01053 514 MobiDBLite consensus disorder prediction 1 21 - -
Cmo16g01053 514 Pfam Protein phosphatase 2C 190 380 IPR001932 -
Cmo16g01053 514 SMART PP2C_4 74 401 IPR001932 -
Cmo16g01053 514 MobiDBLite consensus disorder prediction 154 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01053 Cmo-Chr16:7378460 Cmo20g00582 Cmo-Chr20:2863747 1.56E-143 dispersed
Cmo17g00334 Cmo-Chr17:2018961 Cmo16g01053 Cmo-Chr16:7378460 6.98E-113 dispersed
Cmo16g01053 Cmo-Chr16:7378460 Cmo05g00859 Cmo-Chr5:5570993 8.50E-165 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01053 - - cmo:103490977 887.871