Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01055 ATGGCGATGCGAGAGCTTGTTACTGGAGGAGCTGCTTGTGCTGTTCCTGGTGCTTCTTCTTCTTCTAACCCTCTCGGTGCCCTTGCCAACGCAATTATTGGCTCCTCATCCAAGACCCAGGAAAGGCTACGGGAAATTCCTACATCGCAGCTCACAGGTCCAGAAAGGCCTTTTGCCCCTGCGAGCCATGGGCAGCTCCCTGGCTCTGAATTTGATCACCCACCGCTTCATCCCAATGAGCAGGCGTCTAATTTTTTTAGCGGCTTCCACTCGGCTGCCGATCAGAGTGGTCTGGCCTCTGCATGGAATGAGGTACAGAGCGGTCCTCCTCCTGTCCATTTGAGAGATATGCAACCAAATCTTGCTGAATTTGATCGAATTTATGACCAAATTCCTGCTTCTCAGCATCAACCCGTATTGGATGGGCCACCGCAAAGAATTCTGTCAAACTTTTTGCACTCATTTGTAGAGAGTAGCCGTGGTGGAATACCTTTTCATCCTACCTCTCTGCCTTTATTGGGACTATCTGAAGGTGATAAACAATGTATACGAGATCGTAGTAGCATAATGGCTCGACATTTTTTTGCAGATAAGAATGAAGACTTCATAAATGCACAGGTGAATGCACTTCTATCTTCCTTAGACATTGACAACAGTAGACAGGTTAGGGGGCCTCAGCCTGGTAGGTTTCATGAGTTGGAGGATTATTGGAATGAATCTCAAGCTCTCCAGAGACCTGGTGGTCAAATTGCAGATGGATGGGCCTCTGAATATAGCCTAAACCGGGAAAAGTATGCTGATCATGAGGCTTGGGCTCAGTCTTTCGAACAACAACATGGTGCCAATGGATGGGCCTCTGAGTTTGAGAAGGAGAAGTTTCAGTTAGCATCGGCAGAAAAAATGGCAGGTGGTAATATGATGAACTTAGCTGCAATGGAGCAGACTCACAGGCTTGCAAAGACGTTAGCTGATAATAACGACCCTAAATTTCAGAACTCGAAGTTTCTTCAGTTTGTTTCAAAGATGAGTAGGGGTGAACTTATTATTGAAGATAATCAAGTCAAGCCAAACTCTTTATCTCCATCAGATAACTGGGCTTCCGAGTACCAGCAACAGTATAATGGAGGTCTTCCCTGGGCTGATGAATTTGTTTCTAATCAAACTAATCGGTGGGCTGATGAGTTTGCTGAAGAGAAGCAACATATGTCAGATGATCCATGGGTAAATGAATTTTCCAAGTTGCACATGCAAGACGATTGGGTGGAAGAATTTGGTCAGCAGGTTGGAGAAGGGGCTTCTGGAGAAGCCGATAATTGGGCAAATGCATATGATGAGTATCTAAATGAACAAGTAGCTGCCAAGGGAAAGACAGATGCTTCAAAGGGAATATACGTCTTTTCTGATATGAACCCATATGTTGGTCATCCTAATCCCTTGAAGGAAGGCCAGGATCTGTTCCATAAAGGCCTTCTGAGTGAGGCAGTGCTCGCTTTAGAGGCTGAAGTTATGAAAAACCCTGAAAATTCTGAAGGTTGGAGGCTTCTTGGAATTGCACATGCTGAAAATGATGATGATCAACAGGCTATTGCTGCCATGAAGCGGGCACTGGATGCTGACCCTACAAACTTAGAGGTGCTTCTTGCGCTTGGTGTGAGTCACACAAATGAATTAGAGCAAGCTGCTGCTTTAAGATACTTGTACGGATGGTTACAGCATCACCCAAAGTATGGAATGCTTGCAAAACTGGAGCTTTCTGGTTCGTTGTACTATGCAGATGTAGCTGGCTTATTTAACGAAGCTGCAAAAATGTTCCCTGATGATGCTGATGTGCACATAGTACTTGGTGTCCTTTATAATTTGTCCAGAGAATTTGACAAAGCAATTGCATCCTTTGAGACAGCCTTGAAACTAAAGCCGCAAGATTACTCTCTTTGGAACAAGCTAGGTGCTACGCAAGCTAACAGCATTCAAAGTGCTGATGCCATATTAGCTTATCAACAGGCACTTGATTTGAAGCCTAATTACGTTCGTGCCTGGGCCAATATGGGAATCAGTTATGCTAATCAGGGGCTCTATGAGGAATCGATTAAGTACTATGTAAGATCACTTAGTATGAATCCAAAGGCAGACAATGCATGGCAATACTTAAGAATTTCACTAAGCTGTGCATCAAGGAATGACATGCTGGAAGCCTGTGATTCCCGCAATCTCGATGTTCTTCAGAAGGAGTTCCCATTGTGA 2241 44.58 MAMRELVTGGAACAVPGASSSSNPLGALANAIIGSSSKTQERLREIPTSQLTGPERPFAPASHGQLPGSEFDHPPLHPNEQASNFFSGFHSAADQSGLASAWNEVQSGPPPVHLRDMQPNLAEFDRIYDQIPASQHQPVLDGPPQRILSNFLHSFVESSRGGIPFHPTSLPLLGLSEGDKQCIRDRSSIMARHFFADKNEDFINAQVNALLSSLDIDNSRQVRGPQPGRFHELEDYWNESQALQRPGGQIADGWASEYSLNREKYADHEAWAQSFEQQHGANGWASEFEKEKFQLASAEKMAGGNMMNLAAMEQTHRLAKTLADNNDPKFQNSKFLQFVSKMSRGELIIEDNQVKPNSLSPSDNWASEYQQQYNGGLPWADEFVSNQTNRWADEFAEEKQHMSDDPWVNEFSKLHMQDDWVEEFGQQVGEGASGEADNWANAYDEYLNEQVAAKGKTDASKGIYVFSDMNPYVGHPNPLKEGQDLFHKGLLSEAVLALEAEVMKNPENSEGWRLLGIAHAENDDDQQAIAAMKRALDADPTNLEVLLALGVSHTNELEQAAALRYLYGWLQHHPKYGMLAKLELSGSLYYADVAGLFNEAAKMFPDDADVHIVLGVLYNLSREFDKAIASFETALKLKPQDYSLWNKLGATQANSIQSADAILAYQQALDLKPNYVRAWANMGISYANQGLYEESIKYYVRSLSMNPKADNAWQYLRISLSCASRNDMLEACDSRNLDVLQKEFPL 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7401671 7411567 - CmoCh16G010550.1 Cmo16g01055 400090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01055 746 Pfam Tetratricopeptide repeat 479 541 - -
Cmo16g01055 746 Pfam Tetratricopeptide repeat 594 641 - -
Cmo16g01055 746 ProSiteProfiles TPR repeat profile. 509 542 IPR019734 GO:0005515
Cmo16g01055 746 SMART tpr_5 608 641 IPR019734 GO:0005515
Cmo16g01055 746 SMART tpr_5 676 709 IPR019734 GO:0005515
Cmo16g01055 746 SMART tpr_5 642 675 IPR019734 GO:0005515
Cmo16g01055 746 SMART tpr_5 509 542 IPR019734 GO:0005515
Cmo16g01055 746 ProSiteProfiles TPR repeat profile. 676 709 IPR019734 GO:0005515
Cmo16g01055 746 PANTHER PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 1 746 IPR024111 -
Cmo16g01055 746 SUPERFAMILY TPR-like 461 746 IPR011990 GO:0005515
Cmo16g01055 746 MobiDBLite consensus disorder prediction 48 84 - -
Cmo16g01055 746 ProSiteProfiles TPR repeat region circular profile. 676 708 - -
Cmo16g01055 746 ProSiteProfiles TPR repeat region circular profile. 608 641 - -
Cmo16g01055 746 ProSiteProfiles TPR repeat profile. 608 641 IPR019734 GO:0005515
Cmo16g01055 746 Gene3D Tetratricopeptide repeat domain 458 746 IPR011990 GO:0005515
Cmo16g01055 746 ProSiteProfiles TPR repeat profile. 642 675 IPR019734 GO:0005515
Cmo16g01055 746 PANTHER BNAC09G53570D PROTEIN 1 746 - -
Cmo16g01055 746 Pfam Tetratricopeptide repeat 677 708 IPR001440 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01055 K13342 PEX5, PXR1; peroxin-5 - csv:101209718 1389.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01156 Cmo-Chr9:7219107 Cmo16g01055 Cmo-Chr16:7401671 6.22E-06 dispersed
Cmo16g01055 Cmo-Chr16:7401671 Cmo03g01132 Cmo-Chr3:9043371 2.22E-08 dispersed
Cmo16g01055 Cmo-Chr16:7401671 Cmo06g00735 Cmo-Chr6:3776867 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g800 . . . . Bpe09g00092 . . Bma13g01149 Cmo16g01055 . . . . . . . . . . . . . . . Cla10g00338 Cam10g0351 Cec10g0364 Cco10g0359 Clacu10g0352 Cmu10g1188 Cre10g0599 . . Cone14ag1279 Cone15ag1306 . Csa03g00358 . Cme06g02675 Blo07g00850 . Bda05g00656 Bda12g00995 . Bpe03g00732 . . Sed08g2850 . . . . . . Cpe14g00832 . Bhi11g00375 Tan01g1931 Cmetu06g1763 . Hepe06g1219 Mch10g1459 . . . . . . . . . . Chy06g01965 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004195 3 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01055 Cmo_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.128954 0.0