Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01059 ATGGCGTCTTCTTCAGGAAGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAAGGTCGCTGACATTGTAGGCAACGAAGAAGCAGTTTCTCGGCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATTTCATATTATCTGGTCCGCCTGGAACTGGGAAGACAACCAGTATTCTGGCTCTTGCTCACGAGCTTTTGGGACCAAATTACAAGGATGGTGTTCTGGAGCTTAATGCATCAGATGAAAGGGGAATCGACGTTGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGACGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCGAACACAACACGTTTTGCACTTGCATGTAATACCTCCTCAAAAATTATCGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTACTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACCGCTGATGGTGATATGAGGCAAGCGCTGAATAATTTGCAAGCAACATATAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGCGATCAACCGCATCCGCTGCATGTTAAGAACATGGTGCGTAACGTGCTTGAAGGTAAATTTGACGATGCTTGTGCAGCTCTGAAGCAACTCCACGACATGGGCTATTCTCCCACTGACATAATAACCACTCTTTTCCGTATTATTAAGAACTATGATATGGCTGAGTATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGAGTTGGGTCTTATCTGCAGCTATGCGGTCTTTTGGCCAAGCTTTCCATTGTTCGTGAGACTGCGAAAGCGCCATGA 999 44.94 MASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGKTTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 332
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 7436229 7443521 + CmoCh16G010590.1 Cmo16g01059 400094
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01059 332 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 8 330 - -
Cmo16g01059 332 SUPERFAMILY post-AAA+ oligomerization domain-like 235 326 IPR008921 GO:0003677|GO:0006260
Cmo16g01059 332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 234 IPR027417 -
Cmo16g01059 332 Gene3D - 236 328 - -
Cmo16g01059 332 Pfam Replication factor C C-terminal domain 236 321 IPR013748 -
Cmo16g01059 332 PANTHER REPLICATION FACTOR C SUBUNIT 2 8 330 - -
Cmo16g01059 332 CDD HLD_clamp_RFC 171 233 - -
Cmo16g01059 332 Gene3D - 7 171 IPR027417 -
Cmo16g01059 332 Gene3D - 172 235 - -
Cmo16g01059 332 SMART AAA_5 46 178 IPR003593 -
Cmo16g01059 332 Pfam ATPase family associated with various cellular activities (AAA) 51 168 IPR003959 GO:0005524|GO:0016887
Cmo16g01059 332 CDD AAA 29 166 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01421 Cmo-Chr1:11145632 Cmo16g01059 Cmo-Chr16:7436229 8.42E-64 dispersed
Cmo02g01336 Cmo-Chr2:7944644 Cmo16g01059 Cmo-Chr16:7436229 9.22E-14 dispersed
Cmo04g02487 Cmo-Chr4:18328007 Cmo16g01059 Cmo-Chr16:7436229 2.71E-58 dispersed
Cmo07g00479 Cmo-Chr7:2183312 Cmo16g01059 Cmo-Chr16:7436229 7.93E-10 dispersed
Cmo16g01059 Cmo-Chr16:7436229 Cmo15g00675 Cmo-Chr15:3298109 1.30E-66 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01059 K10755 - csv:101208984 623.624