Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo16g01059 | ATGGCGTCTTCTTCAGGAAGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAAGGTCGCTGACATTGTAGGCAACGAAGAAGCAGTTTCTCGGCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATTTCATATTATCTGGTCCGCCTGGAACTGGGAAGACAACCAGTATTCTGGCTCTTGCTCACGAGCTTTTGGGACCAAATTACAAGGATGGTGTTCTGGAGCTTAATGCATCAGATGAAAGGGGAATCGACGTTGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGACGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCGAACACAACACGTTTTGCACTTGCATGTAATACCTCCTCAAAAATTATCGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTACTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACCGCTGATGGTGATATGAGGCAAGCGCTGAATAATTTGCAAGCAACATATAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGCGATCAACCGCATCCGCTGCATGTTAAGAACATGGTGCGTAACGTGCTTGAAGGTAAATTTGACGATGCTTGTGCAGCTCTGAAGCAACTCCACGACATGGGCTATTCTCCCACTGACATAATAACCACTCTTTTCCGTATTATTAAGAACTATGATATGGCTGAGTATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGAGTTGGGTCTTATCTGCAGCTATGCGGTCTTTTGGCCAAGCTTTCCATTGTTCGTGAGACTGCGAAAGCGCCATGA | 999 | 44.94 | MASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGKTTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP | 332 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 7436229 | 7443521 | + | CmoCh16G010590.1 | Cmo16g01059 | 400094 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo16g01059 | 332 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 8 | 330 | - | - | |
| Cmo16g01059 | 332 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 235 | 326 | IPR008921 | GO:0003677|GO:0006260 | |
| Cmo16g01059 | 332 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 12 | 234 | IPR027417 | - | |
| Cmo16g01059 | 332 | Gene3D | - | 236 | 328 | - | - | |
| Cmo16g01059 | 332 | Pfam | Replication factor C C-terminal domain | 236 | 321 | IPR013748 | - | |
| Cmo16g01059 | 332 | PANTHER | REPLICATION FACTOR C SUBUNIT 2 | 8 | 330 | - | - | |
| Cmo16g01059 | 332 | CDD | HLD_clamp_RFC | 171 | 233 | - | - | |
| Cmo16g01059 | 332 | Gene3D | - | 7 | 171 | IPR027417 | - | |
| Cmo16g01059 | 332 | Gene3D | - | 172 | 235 | - | - | |
| Cmo16g01059 | 332 | SMART | AAA_5 | 46 | 178 | IPR003593 | - | |
| Cmo16g01059 | 332 | Pfam | ATPase family associated with various cellular activities (AAA) | 51 | 168 | IPR003959 | GO:0005524|GO:0016887 | |
| Cmo16g01059 | 332 | CDD | AAA | 29 | 166 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo01g01421 | Cmo-Chr1:11145632 | Cmo16g01059 | Cmo-Chr16:7436229 | 8.42E-64 | dispersed | |
| Cmo02g01336 | Cmo-Chr2:7944644 | Cmo16g01059 | Cmo-Chr16:7436229 | 9.22E-14 | dispersed | |
| Cmo04g02487 | Cmo-Chr4:18328007 | Cmo16g01059 | Cmo-Chr16:7436229 | 2.71E-58 | dispersed | |
| Cmo07g00479 | Cmo-Chr7:2183312 | Cmo16g01059 | Cmo-Chr16:7436229 | 7.93E-10 | dispersed | |
| Cmo16g01059 | Cmo-Chr16:7436229 | Cmo15g00675 | Cmo-Chr15:3298109 | 1.30E-66 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo16g01059 | K10755 | - | csv:101208984 | 623.624 |