Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01061 ATGGGTAGCCGAGATCTGGAAAGAGGAGGGACTAAATCCAATAACAACCCACCTGGGAATTACTCAGGTTCTTATTATCAAGACGCCTCTGAGAAGCAATGGACTTCTTGGTTGGTTCCTATGTTCGTGGTGGCTAATGTTGCTATGTTCGTTGTTGTTATGTATGTTAATAACTGTCCCCACAACAATCTGGGCTCTCAGGAGTGTGTTGCCAGGTTTCTTGGACGGTTTTCTTTTGAGCCTCTTAGAGTGAATCCTCTGTTTGGTCCTTCTTCTTCCACACTACAGAAACTGGGAGCCCTTGAATGGGAAAAGATAGTTCATGGGCATCAAGCATGGAGGCTCATTACTGGTATTTGGCTGCATGCTGGAGTCATTCATTTGCTTGCAAATATGTTGAGCTTGGTATTTATCGGGATCCGCCTCGAACAACAATTCGGATTCATTCGGGTCGGGATACTCTACTTGCTTTCGGGATTAGGTGGAAGCATATTATCGTCTCTTTTCATACAAAACAACATCTCTGTTGGTGCCTCTGGTGCTTTATTTGGGCTTCTTGGTGCAATGCTATCAGAACTCTTGACTAACTGGACAATATATACCGATAAGGCTGCAGCTCTCATCACACTCATCGTCATCATCGCCATTAACTTGGCTGTCGGGATTCTTCCTCATGTCGATAACTTCGCCCATATTGGTGGGTTCTTGACAGGCTTTCTTCTTGGGTTTGTTTTGCTTCTCCGTCCTCAGTTCGGATGGATGGAACGTCGACATCTCCCCGCAAGTTCTCGAGCTGTATCCAAGCACAAGGCTTACCAATATATCTTATGCTTCGTGGCCCTCGCTCTTCTAATTGTCGGGTTCACGATCGGGTTGCTGATGCTATTTCGAGGGGAGAACGGAAACAACCATTGCAGGTGGTGTCATTATCTAAGTTGTGTGCCAACATCAAAATGGGAATGTGGGAACTGA 972 45.68 MGSRDLERGGTKSNNNPPGNYSGSYYQDASEKQWTSWLVPMFVVANVAMFVVVMYVNNCPHNNLGSQECVARFLGRFSFEPLRVNPLFGPSSSTLQKLGALEWEKIVHGHQAWRLITGIWLHAGVIHLLANMLSLVFIGIRLEQQFGFIRVGILYLLSGLGGSILSSLFIQNNISVGASGALFGLLGAMLSELLTNWTIYTDKAAALITLIVIIAINLAVGILPHVDNFAHIGGFLTGFLLGFVLLLRPQFGWMERRHLPASSRAVSKHKAYQYILCFVALALLIVGFTIGLLMLFRGENGNNHCRWCHYLSCVPTSKWECGN 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7447423 7451865 + CmoCh16G010610.1 Cmo16g01061 400096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01061 323 PANTHER RHOMBOID-LIKE PROTEIN 1 323 - -
Cmo16g01061 323 Gene3D - 32 249 IPR035952 -
Cmo16g01061 323 Pfam Rhomboid family 107 249 IPR022764 GO:0004252|GO:0016021
Cmo16g01061 323 SUPERFAMILY Rhomboid-like 33 250 IPR035952 -
Cmo16g01061 323 MobiDBLite consensus disorder prediction 1 22 - -
Cmo16g01061 323 PANTHER RHOMBOID-RELATED 1 323 IPR002610 GO:0004252|GO:0006508|GO:0016021
Cmo16g01061 323 MobiDBLite consensus disorder prediction 8 22 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01061 - - - csv:101208741 550.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01644 Cmo-Chr1:12475330 Cmo16g01061 Cmo-Chr16:7447423 7.03E-07 dispersed
Cmo16g00147 Cmo-Chr16:670500 Cmo16g01061 Cmo-Chr16:7447423 6.13E-160 dispersed
Cmo16g01061 Cmo-Chr16:7447423 Cmo17g00828 Cmo-Chr17:7768378 4.37E-90 dispersed
Cmo16g01061 Cmo-Chr16:7447423 Cmo02g01516 Cmo-Chr2:8834093 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g376 . . . . . . . Bma14g00584 . Cmo16g01061 . . . . . . Cpe05g00311 . . . . . . . . . . . . . . . . . . . . . . . . . Bda09g00049 . . . . . . . . . . . . . Bhi12g00209 . . Lac11g2129 Hepe06g1577 . Lcy12g1689 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000228 6 5 4 5 7 5 5 5 5 5 4 5 7 5 5 6 5 6 6 5 5 5 5 5 5 4 5 12 7 4 163
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01061 Cmo_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0