Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01075 ATGGATGAGGAAATGGAGGTTGAGCCGGTTGTGTTTGAGGCTTATGAAGTTGACATTGAGTATGAGTTTGATGCGGCTAGGTATTTTGATTTCACTCGCGAGGAGAGTTTTGATGAGGCTTTTCAAGCTGAGCTTTGGTTCGAGTCTGCTGGAAGCTACCCTCCTTCTCCGTTCGTAGCGAAACTGTTTTTGAGGGAAGAGTGTCTTCTTGCTATTGAAAATGCTTCTAAAAAATCTGAGGGTCAGAATAACATAATTGGTTCGCTTAATGGTGCCAGTCAGGAAGCTGGTTCAGTACGCGAGAATGACCGAGATTGCCAAGGATCAAATAGAGGAATCTTCACCAATTTACGAGATGGAGATGTACAAAAACTTCATAATCAACATCTCCAATTTACATCAGGATCTACATCATACAATCATCCATCCCTGAACAAACCCAAAGTTAAAGCCTCATCTTGTGTCAAGCCATCTAAACCCCGGAGCACTACTCTGATGAAATCAACAGCAAGCCACTTAGCGAGACAAAACTTCCCTGCTCAACATCCTGATATCAAGTTGCAGAGAGTAGTTAAAAACAATGAGACAAGTGTCTGTGGTTCTGTTATTGAAAGTCAGGCTATCAAGAAGCAGAAGCTGGATGGTGGTCACTCGCATAAGGTGAATGAAATAAAACAGCAGACTAATTTAGTCCACAAGCTTCCCAAAAAGGATGGAGTTGCTGATAAAACTACTAAAAATGTCAAGCTGAAGATTACAATTCCTAGGCAGCCTGACCTTGAAACAGCACAAAGGGCACATAGAATAAGACTGAAAAGTAGGATGGAAGAAGATTACGAGACAACTACTCGAAGATTTAGAGCCCGTCCATTAAACAGAAAAATTTTAGAGGGGCCATCACTTCCGCTCTTAAAGAAAAGCACTCCCAAATTGCCTGAGTTTCAAGAATTTCACTTGAGGACGTTGGAGAGGGCCATGCAAAATACTTCTGCTGTTTCATCTTCAGCCTTTCATCATGATTATTCTGAAATTACAGTCACTAGAAACTTGGAGTCAAGAAGATCAAATGCCATTGATGATCAAAAGCATGATGAGTATCATATAATGCAGAATTTCAAGGCTTGCCCTCTTAATAGAAAGATATTTTCAAGTAAAGGCGAAATGGGCGTTTTTAGAAATAGCAAGCAAGAAACCACAATACCAATGGAATTTAAATTCCATCGCGAGAAGAGAATTTTGCAACCACCAACAGAACTTTTCACCAAGCTTTCGCTAACATCTCAATTCCATTCAAATAATGGACCCTTGACAAAAGTTCCTTCCCGTCCATCCATACCTTTGAAGAGCTCAAAGGAAAATAATTTGGTGTTGTTTCAACCAGAACGTAAGATAACTCAATTGGTGAAAGAATCACCTCCATTTGCGGGAAAACATATTTATTTGGAAAATAATGGATGCATATCTGATTCCTGCAACAGCCAGTTGACCGTGAGGAACATGGGAATTCGCTAA 1512 40.28 MDEEMEVEPVVFEAYEVDIEYEFDAARYFDFTREESFDEAFQAELWFESAGSYPPSPFVAKLFLREECLLAIENASKKSEGQNNIIGSLNGASQEAGSVRENDRDCQGSNRGIFTNLRDGDVQKLHNQHLQFTSGSTSYNHPSLNKPKVKASSCVKPSKPRSTTLMKSTASHLARQNFPAQHPDIKLQRVVKNNETSVCGSVIESQAIKKQKLDGGHSHKVNEIKQQTNLVHKLPKKDGVADKTTKNVKLKITIPRQPDLETAQRAHRIRLKSRMEEDYETTTRRFRARPLNRKILEGPSLPLLKKSTPKLPEFQEFHLRTLERAMQNTSAVSSSAFHHDYSEITVTRNLESRRSNAIDDQKHDEYHIMQNFKACPLNRKIFSSKGEMGVFRNSKQETTIPMEFKFHREKRILQPPTELFTKLSLTSQFHSNNGPLTKVPSRPSIPLKSSKENNLVLFQPERKITQLVKESPPFAGKHIYLENNGCISDSCNSQLTVRNMGIR 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7593430 7598111 - CmoCh16G010750.1 Cmo16g01075 400110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01075 503 MobiDBLite consensus disorder prediction 133 163 - -
Cmo16g01075 503 MobiDBLite consensus disorder prediction 133 147 - -
Cmo16g01075 503 Pfam Cell cycle regulated microtubule associated protein 250 406 IPR027330 -
Cmo16g01075 503 PANTHER TARGETING PROTEIN FOR XKLP2 5 451 IPR009675 GO:0005819|GO:0005874|GO:0032147|GO:0060236
Cmo16g01075 503 PANTHER OS06G0130200 PROTEIN 5 451 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01075 - - - csv:101206074 862.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01063 Cmo-Chr2:6482902 Cmo16g01075 Cmo-Chr16:7593430 3.73E-58 dispersed
Cmo11g01996 Cmo-Chr11:13672582 Cmo16g01075 Cmo-Chr16:7593430 2.06E-06 dispersed
Cmo16g01075 Cmo-Chr16:7593430 Cmo19g01035 Cmo-Chr19:9038739 1.56E-46 dispersed
Cmo16g01075 Cmo-Chr16:7593430 Cmo06g00761 Cmo-Chr6:3951396 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g451 Blo02g01073 . . . . . . . . Cmo16g01075 . . . . . Cpe14g00849 . . . . . . . . Cla10g00314 Cam10g0329 Cec10g0342 Cco10g0334 Clacu10g0325 Cmu10g1165 Cre10g0575 . . . . Lsi07g01363 . . Cme06g02648 . . . . . . Bma05g00791 Bma12g00115 . . . . Cma16g01029 . Car16g00980 . . . . . . . . . . . . . . . . . Csa03g00337 Chy06g01988 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007341 0 3 1 2 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01075 Cmo_Chr16 FPKM 12.275132 12.842385 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0