Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01081 ATGGAGGGAGGAGAAGGGGATGCCGGAAATGGGGCTACTGCAGCTGCAGGATCAAGTCCTCCGAGACCTGAGATGGCAGCTCCGGCACCGGAAGGTGGCGGTCCGGTGAGTTCTGCGGCGGCGGTGGCGGGGAAGAAGAAGAGGGGAAGACCGAGGAAGTATGGGCCGGACGGGAAGTTGAATGCGGCGGCGCTGTCGCCGAAGCCGATATCGACGTCGGCACCTGCACGGTCGGCGGTGATTGATTTCTCGGCGGAGAAACGTGGGAAAGTGCGGCCGGCGAGTTCGTTGAGCAAAACCAAATATGAAACGGAGAATTTAGGTGAATGGGTACCTTGTTCAGTAGGAGCTAATTTCACACCCCATATCATCACTGTCAACACTGGTGAGGACGTTACGATGAAGGTTCTCTCATTTTCTCAACAAGGACCTCGAGCCATTTGTATTCTCTCTGCTAACGGTGTGATTTCGAGCGTCACTCTTCGTCAACCCGATTCTTCTGGAGGAACATTAACATATGAGGGTCGTTTTGAGATACTGTCGTTGTCGGGATCGTTCATGCCGAGCGATAATGCGGGAACAAAGAGTAGAACTGGTGGAATGAGTGTCTCGTTAGCGAGTCCAGACGGACGCATTGTTGGTGGCGGAGTTGTTGGTTTGTTAGTAGCTGCAAGTCCGGTTCAAGTGGTAGTAGGAAGCTTTATATTTGGGAACCAACACGAGCAAAAGCCGAAGAAGCCGAAACAAGATGTTATATTACCGGTTTCCGTTTTTCCAATTTCGAGTGTTGAACCGAAATCATACATGACAACAACGACAACGACGACGACAACATCTTCCCTTCGTGCTGAAACGTGGTCACCTTTAGTTCCAGATTTGAAGAGTCAACCAACTGATATCAATGTACCGATAACTAGTGGTTAA 924 50.65 MEGGEGDAGNGATAAAGSSPPRPEMAAPAPEGGGPVSSAAAVAGKKKRGRPRKYGPDGKLNAAALSPKPISTSAPARSAVIDFSAEKRGKVRPASSLSKTKYETENLGEWVPCSVGANFTPHIITVNTGEDVTMKVLSFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNAGTKSRTGGMSVSLASPDGRIVGGGVVGLLVAASPVQVVVGSFIFGNQHEQKPKKPKQDVILPVSVFPISSVEPKSYMTTTTTTTTTSSLRAETWSPLVPDLKSQPTDINVPITSG 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7648276 7650369 + CmoCh16G010810.1 Cmo16g01081 400116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01081 307 SUPERFAMILY AF0104/ALDC/Ptd012-like 118 238 - -
Cmo16g01081 307 Pfam Plants and Prokaryotes Conserved (PCC) domain 121 234 IPR005175 -
Cmo16g01081 307 ProSiteProfiles PPC domain profile profile. 116 261 IPR005175 -
Cmo16g01081 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 304 IPR039605 GO:0003680
Cmo16g01081 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 31 304 - -
Cmo16g01081 307 MobiDBLite consensus disorder prediction 1 76 - -
Cmo16g01081 307 Gene3D - 121 249 - -
Cmo16g01081 307 CDD DUF296 120 234 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo15g01234 Cmo16g01081 CCT
Cmo15g01234 Cmo16g01081 ECH
Cmo06g01158 Cmo16g01081 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01158 Cmo-Chr6:8884280 Cmo16g01081 Cmo-Chr16:7648276 1.35E-77 dispersed
Cmo16g01081 Cmo-Chr16:7648276 Cmo18g01215 Cmo-Chr18:12076006 2.05E-83 dispersed
Cmo14g02040 Cmo-Chr14:14913849 Cmo16g01081 Cmo-Chr16:7648276 1.36E-87 wgd
Cmo15g01234 Cmo-Chr15:8497053 Cmo16g01081 Cmo-Chr16:7648276 4.72E-124 wgd
Cmo16g01081 Cmo-Chr16:7648276 Cmo02g01551 Cmo-Chr2:8983157 4.47E-129 wgd
Cmo16g01081 Cmo-Chr16:7648276 Cmo06g00770 Cmo-Chr6:4004220 1.63E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01081 - - csv:101205374 442.965