Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01094 ATGATAGCGTTCATTAGATTTCGGAATTTATCGTTCCAATTCCGTAAGGAAACTGAATTAAATAGACGTTTTCATTCCGGAACGAATCTGAAATCCACTTCTCCGGATTCTTCCTGCTCTGCCGTTGCGATTTTCTGGGATTTGGACAATAAACCACCGAAATCGTTACCGCCTTACGAAGCTGCTGTTAAGCTCAAGGCTGCAGCGGCTTCCTTTGGCGCCATTCGGTACATGGTGGCTTATGCGAATCGGCATGCGTTCAGCTATGTGCCGCAAGTTGTTAGAGAGAAAAGGAGAGAGAGGAAGATGCTTAATCAATTGGAGAGGAAAGGTGTGATTAAATCGATTGAGCCGTATCTGTGTCGTGTTTGTGGGAGAAATTTCTATACGAATGAGAAGTTAGTGAATCATTTTAAGCAAATTCATGAGAGTGAGCATACGAAGAGGTTGAATCAGATCGAATCTGCCAAGGGTAGTAGAAGAGTGAAGTTGCTCGCTAAGTATTCGATGAAAATACAGAAGTATAAGAATGGTGCTAGGGATGTTTTGACTCCGAAAGAGGGATATGGTCTAGCAGATGAGTTGAAGAGGGCAGGGTTTTTTGTGAAGACTGTGTCGGATAAGCCTGAAGCTGCCGATGTAGAATTGAGAAACGACATGGTTGAGGTCATGGATAGGAGAAGAGCAGAGTGTTTGGTTCTTGTATCAAATGATTCTGATTTTGTGAATGTTTTGAAGGAGGCCAAGTTGAGATGTCTTAGAACAGTTGTTGTTGGGGATCTTAATGATGGGCCATTGAAGAGAAATGCTGATACTGGGTTTTCTTGGAAGGAGATTTTAATGGGGAAGGCTAAGAAGGAGGCTGTGTCTGTTGTGGGAAAATGGAAGGATCGGGACGTTTTGAAGAGATTGGAATGGACATACAATCCTCAATTGGAGAAGGAAGTGTTTGGTTTGGATGATGATATGGGCGAGGATGAAGATGTTGACCAAGGTTCGGTTGATGAGAATATGACAAATGGTGACAGTGGTGCTTGGTGGGATCTCAGCTCTGATGCTGAAACTGAAGCTGTGTCGTCACGATCATGTAAATGA 1095 43.2 MIAFIRFRNLSFQFRKETELNRRFHSGTNLKSTSPDSSCSAVAIFWDLDNKPPKSLPPYEAAVKLKAAAASFGAIRYMVAYANRHAFSYVPQVVREKRRERKMLNQLERKGVIKSIEPYLCRVCGRNFYTNEKLVNHFKQIHESEHTKRLNQIESAKGSRRVKLLAKYSMKIQKYKNGARDVLTPKEGYGLADELKRAGFFVKTVSDKPEAADVELRNDMVEVMDRRRAECLVLVSNDSDFVNVLKEAKLRCLRTVVVGDLNDGPLKRNADTGFSWKEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPQLEKEVFGLDDDMGEDEDVDQGSVDENMTNGDSGAWWDLSSDAETEAVSSRSCK 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7725276 7726370 + CmoCh16G010940.1 Cmo16g01094 400129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01094 364 MobiDBLite consensus disorder prediction 321 364 - -
Cmo16g01094 364 Pfam NYN domain 191 271 IPR021139 GO:0004540
Cmo16g01094 364 SUPERFAMILY beta-beta-alpha zinc fingers 118 144 IPR036236 -
Cmo16g01094 364 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 13 357 - -
Cmo16g01094 364 ProSitePatterns Zinc finger C2H2 type domain signature. 121 142 IPR013087 -
Cmo16g01094 364 CDD PIN_LabA-like 129 260 - -
Cmo16g01094 364 Gene3D - 36 279 - -
Cmo16g01094 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 147 IPR013087 -
Cmo16g01094 364 PANTHER - 13 357 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00241 Cmo-Chr9:1088796 Cmo16g01094 Cmo-Chr16:7725276 1.74E-69 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11325 PF01936 NYN 1.70E-09 CL0280 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01094 - - cmax:111465052 707.983