Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01109 ATGTTAACTCCTCTGAATTGCCAACCTTCGCCTCAACTATCGACCATGCCGAATTCCCAATCCCAACTTGCTTCCCGCCATGTCGCGGTAATCGGAGCCGGCGCCGGCGGCATTGTCGTTGCCCGTGAGCTCAGCCGCGAGGGCCACCGTGTGGTCGTCTTCGAACGGAACAGTCAAATTGGAGGGACCTGGGTGTATTCTCCGGAAATCGAATCCGATCCACTTGGAGTCAACCCTGATCGGACCCGAATCCATAGCAGCCTTTACAAATCTCTACGCACCAATCTCCCTAGAGAACTCATGGGCGTTCGGGATTACCCGTTTGTGCCACGAGAAGGGGAAGATCGAGATCCGAGGCGATTTCCAGGTCATCGAGAGGTTTTGAAGTATTTGGAAGATTTCGCTAATGAATTTGGGATCTGTGAATTAGTGAGATTTCGAACTGAGGTGGTTTTTGTTGGTCTGGAGCTTGGAAAATGGAGGATTCGATTTCGATGTGAAAATGGGGCTGTTGATGAAGAAACTTTTGATGCTGTAGTTGTTTGTGTTGGGAATTTTTCGCTGCCTCGAGTGGCAGAGATTCCTGGTATCGATGAATGGCCTGGTGAGCAGATGCATAGTCACAATTATCGCAGTCCCGAACCATTTCGGGGTAAGGTTGTTGTCGTGATAGGTTATTCTTCAAGTGGTACGGACATTTCTCAGGAGCTCATTGGGGTTGCCAAAGAAATTCATATTGCTTGGAAATCAGCTAAAACAGAGCTTTTGGACACACAATCAAGTATTAATAGCGTGTCATTGCATCCAATGATCGAAAGTGTCCATAAAGATGGGAGAGTGGTCTTTCAAGATGGGTGCATCGTTTCGGTGGATGTTATTCTGCACTGCACTGGGTACAAGTATGATTACCCTTTTCTTGAAACCAATGGCATTGTTACTGTGAACGAGAACCGTGTAGGACCTCTATACAAGCATGTCTTCCCCCCAGCGTTGGCCCCGGGGCTTTCCTTTGTTGGGTTACCATTTAAGGCAAGCAATTGGGTTGCTGGTGTTTTATCAAACAGGATTGCACTTCCATCAAAAGAGGAGATGTTGGCCGATGTTAGAGCTTTCTACGCAGCTCTTGAAGCTTCTGGCAAGCCCAAGCATCTGACCCACGAATTGGGTGATTCTTTGCCTGCCTACATGAACTGGCTTGCAGCAACTTGTGGTCGTCCTGCGTATGAAGAATGGAGAAAAGAAATGTACATTGCTACTAACATTAATAGACTGGCCAATCTCGAGTCCTTCCGTGATGTTTGGCACGACAATGAGTTGAGTCGTCAAGCTTATGAGGAATTTAGTAAGTTTACTACAAATGAAAGCAGTCAAAACAACTCACATATGAATGTTTGA 1395 46.74 MLTPLNCQPSPQLSTMPNSQSQLASRHVAVIGAGAGGIVVARELSREGHRVVVFERNSQIGGTWVYSPEIESDPLGVNPDRTRIHSSLYKSLRTNLPRELMGVRDYPFVPREGEDRDPRRFPGHREVLKYLEDFANEFGICELVRFRTEVVFVGLELGKWRIRFRCENGAVDEETFDAVVVCVGNFSLPRVAEIPGIDEWPGEQMHSHNYRSPEPFRGKVVVVIGYSSSGTDISQELIGVAKEIHIAWKSAKTELLDTQSSINSVSLHPMIESVHKDGRVVFQDGCIVSVDVILHCTGYKYDYPFLETNGIVTVNENRVGPLYKHVFPPALAPGLSFVGLPFKASNWVAGVLSNRIALPSKEEMLADVRAFYAALEASGKPKHLTHELGDSLPAYMNWLAATCGRPAYEEWRKEMYIATNINRLANLESFRDVWHDNELSRQAYEEFSKFTTNESSQNNSHMNV 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7834107 7838487 - CmoCh16G011090.1 Cmo16g01109 400144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01109 464 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 21 451 - -
Cmo16g01109 464 Pfam Flavin-binding monooxygenase-like 264 370 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cmo16g01109 464 Pfam Flavin-binding monooxygenase-like 26 249 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cmo16g01109 464 MobiDBLite consensus disorder prediction 1 20 - -
Cmo16g01109 464 SUPERFAMILY FAD/NAD(P)-binding domain 271 434 IPR036188 -
Cmo16g01109 464 Gene3D - 28 433 IPR036188 -
Cmo16g01109 464 PANTHER DIMETHYLANILINE MONOOXYGENASE 21 451 - -
Cmo16g01109 464 Gene3D - 193 296 IPR036188 -
Cmo16g01109 464 PRINTS Flavin-containing monooxygenase (FMO) signature 205 219 IPR000960 GO:0050660|GO:0050661
Cmo16g01109 464 PRINTS Flavin-containing monooxygenase (FMO) signature 283 310 IPR000960 GO:0050660|GO:0050661
Cmo16g01109 464 PRINTS Flavin-containing monooxygenase (FMO) signature 50 74 IPR000960 GO:0050660|GO:0050661
Cmo16g01109 464 PRINTS Flavin-containing monooxygenase (FMO) signature 232 247 IPR000960 GO:0050660|GO:0050661
Cmo16g01109 464 PRINTS Flavin-containing monooxygenase (FMO) signature 26 42 IPR000960 GO:0050660|GO:0050661
Cmo16g01109 464 SUPERFAMILY FAD/NAD(P)-binding domain 26 247 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01109 - - - csv:116401639 749.969
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00851 Cmo-Chr1:4522323 Cmo16g01109 Cmo-Chr16:7834107 1.72E-135 dispersed
Cmo16g01109 Cmo-Chr16:7834107 Cmo10g00819 Cmo-Chr10:3830988 1.51E-18 dispersed
Cmo16g01109 Cmo-Chr16:7834107 Cmo06g00787 Cmo-Chr6:4114586 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g505 . . . . . Bpe07g00163 . . . Cmo16g01109 . . . . . Cpe14g00878 . . . . . . . . . . . . . . . . . . . . . . Cme06g02609 . . . . . . . Bma12g00154 . . . . Cma16g01059 Car06g00685 . . . . . . . . . . . . . . . . . . . Chy06g02022 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002306 0 0 1 1 1 3 2 1 2 4 1 1 2 4 4 2 1 1 2 2 1 2 1 4 2 2 1 4 1 5 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01109 Cmo_Chr16 FPKM 11.404159 10.268279 16.056883 16.850006 4.834709 4.036887 5.571541 3.877563 3.964201 4.572426