Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01131 ATGCAGAAGTTGCAGAGAGTTCATTTGGAGCTGAAAAGCGGCGATTCGAGAAACGATGCGCTACGAGCTATGGTTTGCACTGCTAGTGATTTACAGGGGTGGAAGGATTTTCCTAAGGACCTTAGAGTTCTTCTCCTTGATGGAGATAGCAGTTCTTCAGCTGAGATAAGAACAAAGCTTGAGGAAATGGAGTATGTTGTTGTGACTTACTACAATGAGAATGATGCATTGTCAGCCATTTCGAGCAAACCCAATACCTTTCATGTCGCCATTGTGGAGGTAACGACGAGCAGTCACGATGGGAATTTTAAGTTTCTTGAAGCTGCTAAGGACTTGCCTACCATTATGATTTCGAATATCCATTGCCTAAGCACGATGATGAAGTGCATAGCGCTCGGTGCGATTGAGTTCCTTCAGAAACCGCTCTCAGAGGACAAACTGAGGAATATTTGGCAGCATGTTGTTCATAAGGCGTTCAATGCAGGCGGTAGCGCCGTTCCCAGTTCTTTAAAGCCTATCAAAGAATCCGTTGCCTCCATTCTGCACCTAGAATCAGAAAACAGTGAAAACAATAATCCAGTCCCGAAAGAGTTAGAAATATCGAGCGGTGATGATGACAATGATCGTGAACTACTAGAAGGAAGTGATAAGTATCCAGCTCCTTCAACTCCTCAGCAGAAGCACGGTATGCGGCTGGTGGACGATGGCGACTGCCAGGATCAATTGAACTGCTTGCTCGAAAAAGAGTGCGTGGAGCAAGACGGGGAATCTAAATCTGTCGAAACTACTTGTATCAATTCGCTTGGTGAAGGCACTTCCCAAGTGGAGAACACTCAGTTACCTGACAAAGAAGGAATAAAAGAGGAAGAGAACTCTGCTGATGGCTGTGGGGCTGCGAGTAACGACGATCACGAGATACATGATCAAGACATCATTAGCAGTTCCGAAGAAAACAAGAGCAAAGCATGTGGTCTCGGTAATTCGAGTGGGACGAAAGTTAGTAGGAAGAAGCTGAAGGTAGACTGGACACCCGAACTGCACCGAAAGTTCGTACAGGCAGTGGAACAACTCGGAGTGAATCAAGCAATTCCTTCTCGAATTCTCGAGCTGATGAAAGTTGAAGGCTTGACAAGGCATAATGTAGCAAGTCATCTTCAGAGACCTGTGATGGCCTTCCCTCCTCCTTATCATTCAAATCATGTAATGCCAGTGGCTCCGATCTACCCGCCGTGGGGACATATGGCGTGCCCCTCGCCCAGTGTCCAAATGTGGGTGTCGCCCGGTTATCCGTCCTGGCAACCACAAGAAATTTGGCCATGGAAGTCATATCCTGGGATGTATGCTGATGCATGGGGTTGCCCTGTGACACCACCTCCTCATAGCCCTCTCCCTTCTCATCTACCTCAACCTATTTTCAGATTTGAAAATGCCGACGCACACGATAAAAGCTATGGCATTGCATTCAACCCGATCGAACTTCAACTGGCTGATGAAGAAATTGACAAAGTGGTGAGAGAGGCAATCAGTAAGCCATGGTTACCATTGCCTTTGGGGCTAAAGCCACCTTCAACAGAAAGTGTACTGTCTGAGCTCTCAAGACAAGGCATCTCAACCGTCCCTTCTCAAATCAACGGCTCTAAACTACTCCAATAA 1653 46.76 MQKLQRVHLELKSGDSRNDALRAMVCTASDLQGWKDFPKDLRVLLLDGDSSSSAEIRTKLEEMEYVVVTYYNENDALSAISSKPNTFHVAIVEVTTSSHDGNFKFLEAAKDLPTIMISNIHCLSTMMKCIALGAIEFLQKPLSEDKLRNIWQHVVHKAFNAGGSAVPSSLKPIKESVASILHLESENSENNNPVPKELEISSGDDDNDRELLEGSDKYPAPSTPQQKHGMRLVDDGDCQDQLNCLLEKECVEQDGESKSVETTCINSLGEGTSQVENTQLPDKEGIKEEENSADGCGAASNDDHEIHDQDIISSSEENKSKACGLGNSSGTKVSRKKLKVDWTPELHRKFVQAVEQLGVNQAIPSRILELMKVEGLTRHNVASHLQRPVMAFPPPYHSNHVMPVAPIYPPWGHMACPSPSVQMWVSPGYPSWQPQEIWPWKSYPGMYADAWGCPVTPPPHSPLPSHLPQPIFRFENADAHDKSYGIAFNPIELQLADEEIDKVVREAISKPWLPLPLGLKPPSTESVLSELSRQGISTVPSQINGSKLLQ 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8067301 8072608 + CmoCh16G011310.1 Cmo16g01131 400166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01131 550 MobiDBLite consensus disorder prediction 184 234 - -
Cmo16g01131 550 Pfam Myb-like DNA-binding domain 340 386 IPR001005 -
Cmo16g01131 550 Gene3D - 40 161 - -
Cmo16g01131 550 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 334 387 IPR017930 -
Cmo16g01131 550 SUPERFAMILY CheY-like 39 157 IPR011006 -
Cmo16g01131 550 PANTHER TRANSCRIPTION ACTIVATOR GLK1 386 547 IPR044825 GO:0003700|GO:0045893
Cmo16g01131 550 PANTHER TRANSCRIPTION ACTIVATOR GLK1 24 387 IPR044825 GO:0003700|GO:0045893
Cmo16g01131 550 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 337 386 IPR006447 GO:0003677
Cmo16g01131 550 SUPERFAMILY Homeodomain-like 335 387 IPR009057 -
Cmo16g01131 550 ProSiteProfiles Response regulatory domain profile. 42 155 IPR001789 GO:0000160
Cmo16g01131 550 MobiDBLite consensus disorder prediction 199 215 - -
Cmo16g01131 550 Gene3D - 333 390 - -
Cmo16g01131 550 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 386 547 - -
Cmo16g01131 550 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 24 387 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01131 - - - cmax:111500281 989.949
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01131 Cmo-Chr16:8067301 Cmo19g00451 Cmo-Chr19:5488488 1.91E-135 dispersed
Cmo16g01131 Cmo-Chr16:8067301 Cmo02g01632 Cmo-Chr2:9407687 1.59E-74 wgd
Cmo16g01131 Cmo-Chr16:8067301 Cmo06g00864 Cmo-Chr6:4894190 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g607 . Blo03g00110 . . . Bpe07g00227 . . . Cmo16g01131 . . . . . Cpe14g00895 Cpe05g00201 . . . . . . . Cla10g00185 Cam10g0191 Cec10g0196 Cco10g0198 Clacu10g0195 Cmu10g1040 Cre10g0445 . . . . . . . . . . . . . . . Bma12g00227 . . . . Cma16g01084 . . . . . . . . . . . . . . . . . . . . Chy06g02116 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001240 1 4 1 2 1 2 1 2 2 2 2 2 8 2 2 8 2 2 5 2 3 2 2 2 2 2 2 2 6 1 77
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11326 PF00249 Myb_DNA-binding 1.80E-07 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01131 Cmo_Chr16 FPKM 5.21988 6.081283 10.662485 10.351987 14.142252 12.916557 13.932767 26.54299 24.199594 24.925663