Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01136 ATGACGGCTTCAGAGGATGAAAATTCCGTCCACAGCAAAAGCTCTCTTGTCATGCTTGCTCCTGTGGAAGCAGTTCTTTTCGATGTAGATGGAACATTGTGTGATTCGGATCCGCTTCATTACTATGCCTTCCGTGAAATGCTTCAAGAGATTGGTTTCAATGGTGGGGTTCCTATTGACGAGGAGTTTTTCATTAAAAATGTTGCTGGCAAGCATAACGATGATGTTGCCCGAGCAATATTCCCAGATGATTTCGAACGAGGTTTGAAATTTTGCGACGAGAAGGAGGCTATGTTTCGAAGGTTGGTTACCGAACAATTAAAACCCGTGAACGGTTTGTATAAAGTGAAGAAATGGATAGAAGACCGCGGACTGAAACGTGCTGCAGTTACGAACGCCCCTCGACCGAATGCCGAGCTCATGATCTCCATGCTTGGTCTTACGGATTTCTTCGAGGCTGTTATTATAGGTGGTGAATGTGAGCATGCCAAACCACATCCAGAACCATATTTAAAGGCTCTGGAAGTACTCGAAGTGTCAAAGGATCACACTTTCATCTTTGAGGATTCTGTATCGGGGATCAAAGCCGGAGTGGCAGCCGAGATGCCTGTCGTCGGTATAGCTACGAGAAATCCCGAGCACTTATTGATGCAAGCAAAGCCTGCCCTCGTCGTAAAGGACTACGATGATCCGAGATTGTGGGCAGCTTTGGACGGACTCGATAAGAGAGGTGGTTCCGTTAAGAACGCATGA 753 46.48 MTASEDENSVHSKSSLVMLAPVEAVLFDVDGTLCDSDPLHYYAFREMLQEIGFNGGVPIDEEFFIKNVAGKHNDDVARAIFPDDFERGLKFCDEKEAMFRRLVTEQLKPVNGLYKVKKWIEDRGLKRAAVTNAPRPNAELMISMLGLTDFFEAVIIGGECEHAKPHPEPYLKALEVLEVSKDHTFIFEDSVSGIKAGVAAEMPVVGIATRNPEHLLMQAKPALVVKDYDDPRLWAALDGLDKRGGSVKNA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8084990 8088330 + CmoCh16G011360.1 Cmo16g01136 400171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01136 250 Pfam Haloacid dehalogenase-like hydrolase 25 206 IPR041492 -
Cmo16g01136 250 Gene3D Putative phosphatase; domain 2 37 105 IPR023198 -
Cmo16g01136 250 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 1 246 - -
Cmo16g01136 250 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 128 207 IPR006439 -
Cmo16g01136 250 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 21 230 - -
Cmo16g01136 250 Gene3D - 23 230 IPR023214 -
Cmo16g01136 250 SUPERFAMILY HAD-like 18 239 IPR036412 -
Cmo16g01136 250 CDD HAD_BPGM-like 24 209 - -
Cmo16g01136 250 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 22 33 IPR006439 -
Cmo16g01136 250 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 120 133 IPR006439 -
Cmo16g01136 250 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 151 167 IPR006439 -
Cmo16g01136 250 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 21 230 - -
Cmo16g01136 250 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING PROTEIN SGPP 1 246 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01136 - - - bhj:120089975 470.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00940 Cmo-Chr8:6110369 Cmo16g01136 Cmo-Chr16:8084990 4.25E-101 transposed
Cmo16g01136 Cmo-Chr16:8084990 Cmo06g00860 Cmo-Chr6:4868730 6.62E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g246 . . . Bda08g00468 . . Bma07g01027 . . Cmo16g01136 . Cma15g01366 Car02g00658 . . Cpe14g01019 . . . . . . . . Cla10g00081 Cam10g0078 Cec10g0081 Cco10g0085 Clacu10g0079 Cmu10g0926 . . . . . Lsi07g01108 . . Cme06g02387 . . . Bda09g00637 Bpe08g00903 . . . . . . . . . Car16g01161 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002057 0 2 1 2 1 2 3 2 2 2 2 2 3 3 3 3 2 3 2 2 3 2 2 3 2 3 1 2 3 3 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01136 Cmo_Chr16 FPKM 22.658682 22.553314 24.761721 30.394674 20.974207 22.965845 20.122395 33.32375 36.108894 35.281185