Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01146 ATGGCGTTTTCAAAGCTTTTCCCTGAGTTCTACGAAGGATTTTCCATGACCCAAACCACTTCTCTGCTATTGCGATTTCCGTTTTTCCCTTTCGTTACGGAATCACTGGCTTCTCAAATCTTCCGCCATTTCCGTTGTCGCGAGTTGCTTCGAGTTCACTCGCGATTAATCCTCCTCCTCTCTTTGCCGTTCATTTACTTCTTTCTTTCGAATCCTCGTCGTTCTGTTGTTCTCAAGTTGTTTGTCGTACTTTTCTTCTCCATCGCGGCTTTGATTTTTCTCAATCTTGCAGTCCCTCGTTTCCCTTCTTTGATTCGTTTGTTTCTTGTTCGATCGTCTCCAATTAACGCGTCGTTCTCATCTTCTGCTGCGACGAAGGCTGTTTCCAATGTTCGTTGGTCGATTGGGTCGAACCCCAAATCGGAGAAACGGTTGATGTCGGGTTCTTGGGTGAAAGTTTACAGTAATGGCGACGTTTACGAGGGGGAATTTCATCAAGGGAGGTGCTCGGGTAGTGGGGTTTATCACTACCATATGAGTGGAAGATATGAAGGCGATTGGATTGATGAGAAGTATGATGGGTATGGCGTAGAGACATGGGCGAAAGGGAGTAGGTACCGTGGTCAGTACAGACAAGGCTTGAGGAATGGAATTGGGATTTACAGATTCTACACAGGGGATGTCTATGCTGGGGAGTGGTCTAATGGCCAGTGCCATGGTTCTGGAGTTCATACTTGTCAAGATGGGAGCCGCTATGTTGGGGAGTTCAAGTGGGGTGTCAAACATGGATTGGGTCACTACCATTATAGAAACGGAGATACGTACGCAGGAGAGTATTTTGCAGACAAGATGCACGGCTTTGGAGTTTATCGGTTTGGCAATGGACATCGTTACGAGGGAGCTTGGCACGAAGGAAATAGGCAAGGGCTTGGTATGTACACTTTTAGGAATGGAGAGACACAGTCTGGTCATTGGCAAAATGGTGTTCTTGATGTGCCCAGTCTTGAAAGTAGCCATCCAGGGTCTTCTTATGCTGTCAGTCATGCTAAGGTTCTCGCTGCAGTCCAGGAAGCAAGGAGAGCTGCAGAGAAAGCATTTGATGCAGGAAGGGTGGACGAAAGAGTTAACAAAGCTGTAGCTGCTGCTAATAAAGCAGCAAACGCAGCAAGAGTTGCAGCTGTGAAGGCTGTCCAGAAACAAATGGATCAAGAAACCTACACCAACCCACCAATCTTACTGGTCTGA 1245 46.99 MAFSKLFPEFYEGFSMTQTTSLLLRFPFFPFVTESLASQIFRHFRCRELLRVHSRLILLLSLPFIYFFLSNPRRSVVLKLFVVLFFSIAALIFLNLAVPRFPSLIRLFLVRSSPINASFSSSAATKAVSNVRWSIGSNPKSEKRLMSGSWVKVYSNGDVYEGEFHQGRCSGSGVYHYHMSGRYEGDWIDEKYDGYGVETWAKGSRYRGQYRQGLRNGIGIYRFYTGDVYAGEWSNGQCHGSGVHTCQDGSRYVGEFKWGVKHGLGHYHYRNGDTYAGEYFADKMHGFGVYRFGNGHRYEGAWHEGNRQGLGMYTFRNGETQSGHWQNGVLDVPSLESSHPGSSYAVSHAKVLAAVQEARRAAEKAFDAGRVDERVNKAVAAANKAANAARVAAVKAVQKQMDQETYTNPPILLV 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8183021 8187464 - CmoCh16G011460.1 Cmo16g01146 400181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01146 414 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 145 249 - -
Cmo16g01146 414 PANTHER - 19 405 - -
Cmo16g01146 414 Pfam MORN repeat 298 319 IPR003409 -
Cmo16g01146 414 Pfam MORN repeat 160 178 IPR003409 -
Cmo16g01146 414 Pfam MORN repeat 275 297 IPR003409 -
Cmo16g01146 414 Pfam MORN repeat 229 251 IPR003409 -
Cmo16g01146 414 Pfam MORN repeat 252 274 IPR003409 -
Cmo16g01146 414 Pfam MORN repeat 206 228 IPR003409 -
Cmo16g01146 414 Pfam MORN repeat 183 205 IPR003409 -
Cmo16g01146 414 Gene3D - 190 235 - -
Cmo16g01146 414 Gene3D - 236 281 - -
Cmo16g01146 414 Gene3D - 142 189 - -
Cmo16g01146 414 Gene3D - 282 348 - -
Cmo16g01146 414 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 19 405 - -
Cmo16g01146 414 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 225 330 - -
Cmo16g01146 414 SMART morn 181 202 IPR003409 -
Cmo16g01146 414 SMART morn 158 179 IPR003409 -
Cmo16g01146 414 SMART morn 250 271 IPR003409 -
Cmo16g01146 414 SMART morn 273 294 IPR003409 -
Cmo16g01146 414 SMART morn 227 248 IPR003409 -
Cmo16g01146 414 SMART morn 296 317 IPR003409 -
Cmo16g01146 414 SMART morn 204 225 IPR003409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01146 - - - csv:101208169 717.998
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g01146 Cmo19g00513 CCT
Cmo16g01146 Cmo19g00513 ECH
Cmo06g00849 Cmo16g01146 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02460 Cmo-Chr4:18192710 Cmo16g01146 Cmo-Chr16:8183021 7.83E-103 dispersed
Cmo08g00979 Cmo-Chr8:6377409 Cmo16g01146 Cmo-Chr16:8183021 5.72E-170 dispersed
Cmo09g00798 Cmo-Chr9:4085920 Cmo16g01146 Cmo-Chr16:8183021 1.22E-101 dispersed
Cmo15g00707 Cmo-Chr15:3437314 Cmo16g01146 Cmo-Chr16:8183021 2.70E-100 dispersed
Cmo16g01146 Cmo-Chr16:8183021 Cmo17g00080 Cmo-Chr17:427427 1.60E-156 dispersed
Cmo16g01146 Cmo-Chr16:8183021 Cmo06g00849 Cmo-Chr6:4754717 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g571 . Blo03g00134 Bda06g01305 . . Bpe07g00201 . . Cmo06g00849 Cmo16g01146 . . . . Sed05g2359 Cpe14g00907 . Bhi11g00093 Tan01g2116 Cmetu06g0894 . Hepe06g1074 Mch10g1606 . Cla10g00203 Cam10g0209 Cec10g0214 Cco10g0215 Clacu10g0212 Cmu10g1055 Cre10g0463 . . Cone6ag0628 Cone9ag0631 Lsi07g01244 . . Cme06g02515 . . . . . . . Bma12g00195 . . Cmo19g00513 Cma06g00826 Cma16g01097 . Car16g01039 . . . . . . . . . . . . . . . . . Csa03g00218 Chy06g02102 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010482 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01146 Cmo_Chr16 FPKM 64.749062 71.099136 60.177288 54.363358 63.124664 58.703255 56.654369 48.250252 48.638252 49.345024