Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01159 ATGGGCAAACAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGTAATGGACCTCCTGATAAGCCTGTATTGTGCAATGCCTGTGGATCTCGATGGAGGACGAAGGGAACTCTTACAAACTATACCCCTCTTCACGCTCGGGCGGATCCTGATGAGTGCGAGGATAAAAGGGTCTCTAAGTGGAAGAACTTGTCAATGTGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAATGGAGTTGTGGTTGGGGTTATCCCTGATCATGCTCAGAGCTTCCACAAGACCGTCGATGAAGATACGAGTTATAGATCAAGTTCGGGATCGGCCATATCAAACTCGGAGAGCTGTCAACAATTTGGTAGTGCAGATGCAAGTGATCTGACAGGCCCCTCACAGTCAACAGCGTGGGAGACGATAGTGCCCTCGAGAAAGAGGACCTGTGTTGGTCATTCGAAGTCTACTGCAGTTGAGAAACTCACTCAAGATCTATACACGATTTTACGTGAACAGCAGTCTTACTTCTCTGGATCTTCCGAGGAGGATTTGCTTTTTGATAGCGAAACTCCGATGGTCTCTGTAGAGATAGGACATGGAAGCGTTCTCATGAGGCATCCAAGTTCGATTGCTCGAGAAGAGGAGTCGGAAGCAAGCTCGATTTCAGTTGATAATAAACAATTCACCATAAACGAGGTTTATTCAGAGCCCTCCATCCTTCCTGTACATTATGAAGCTGACAACAAGACTGTAAATTTTTCCACTCTTGGAATTGGGAGAAAGCACTCTAATGGACAAGGGTTCTTGCAGGAACAAATTAAAAGGGACAGGCCTCAATCAGAAAAAACGCAAGCACTTGGAAACCGTAACTCGCCGCTCTGTAATATAGATCTAACGGACATTCTCAACTTCAGGGAGTTTACGAAGCAATTGACGAGCGAAGATCAGCAAGAATTAATGAAGTATCTTCCGTCTGTTGATACCGAAGAGCTTCCCGAAAGCTTGAATAGCATGTTTGAAAGCCCTGAATTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTGTTCGATTTCTCCTTTCCGGGTGCGAAAAGAGAAGACTGCCGGAGTTTGAGTAGGCTCGTGTTGTGGGATTTGTCAAAATCGAAATGGGTCGAACGGTATCATTTACTCAAGAAATGTAGCAGTGGAGTGGCTGTTCAAGGATTTGCTGCTGCATCAAGTGGCTTTATGAACGGAAAGAGAGTGCTTGATGGCCAAAACAAAAAGCTTTCAGAAACCAGGACTGCAATGAAGAGTCCCAAAAGGGGGACGACAAAGACGAGCGTGGAAAGCAAGGAACTCGTCGACAGCGACGGTTCTTGCTTCAGTCCAAGAAGTTTATTTGCTTTGCCTTCTGATGGAGGTTCCTTCACACTGGAATCTCTCCATTTCGATGAGGATAGTTCGGACCAGGATCTCCTATTGGATGTGAGGTCGAACAACTCCTTTCCTCAAGCCGAGCTCCTTCATCCGTCCCTGAGTTTCGGTACTCCACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTGTGCATCATTGA 1620 45.62 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARADPDECEDKRVSKWKNLSMCKNKEVKLLKRKQYQDNGVVVGVIPDHAQSFHKTVDEDTSYRSSSGSAISNSESCQQFGSADASDLTGPSQSTAWETIVPSRKRTCVGHSKSTAVEKLTQDLYTILREQQSYFSGSSEEDLLFDSETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFTINEVYSEPSILPVHYEADNKTVNFSTLGIGRKHSNGQGFLQEQIKRDRPQSEKTQALGNRNSPLCNIDLTDILNFREFTKQLTSEDQQELMKYLPSVDTEELPESLNSMFESPEFKENLNSFKQLLTEGVFDFSFPGAKREDCRSLSRLVLWDLSKSKWVERYHLLKKCSSGVAVQGFAAASSGFMNGKRVLDGQNKKLSETRTAMKSPKRGTTKTSVESKELVDSDGSCFSPRSLFALPSDGGSFTLESLHFDEDSSDQDLLLDVRSNNSFPQAELLHPSLSFGTPQASNSSSSVNLRLVHH 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8252858 8259891 - CmoCh16G011590.1 Cmo16g01159 400194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01159 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 539 IPR044589 -
Cmo16g01159 539 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Cmo16g01159 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 405 IPR044867 -
Cmo16g01159 539 Gene3D - 287 372 IPR038108 -
Cmo16g01159 539 PANTHER GATA TRANSCRIPTION FACTOR 26 1 539 - -
Cmo16g01159 539 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Cmo16g01159 539 Gene3D - 3 83 IPR013088 GO:0006355|GO:0008270
Cmo16g01159 539 Pfam Asx homology domain 284 368 IPR028020 -
Cmo16g01159 539 MobiDBLite consensus disorder prediction 110 141 - -
Cmo16g01159 539 MobiDBLite consensus disorder prediction 104 141 - -
Cmo16g01159 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cmo16g01159 539 MobiDBLite consensus disorder prediction 517 539 - -
Cmo16g01159 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cmo16g01159 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01159 Cmo-Chr16:8252858 Cmo19g00407 Cmo-Chr19:4775225 0 dispersed
Cmo16g01159 Cmo-Chr16:8252858 Cmo02g01613 Cmo-Chr2:9274355 5.09E-172 wgd
Cmo16g01159 Cmo-Chr16:8252858 Cmo06g00835 Cmo-Chr6:4586921 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11329 PF13919 ASXH 1.10E-09 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01159 - - csv:101205985 931.398