Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01159 ATGGGCAAACAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGTAATGGACCTCCTGATAAGCCTGTATTGTGCAATGCCTGTGGATCTCGATGGAGGACGAAGGGAACTCTTACAAACTATACCCCTCTTCACGCTCGGGCGGATCCTGATGAGTGCGAGGATAAAAGGGTCTCTAAGTGGAAGAACTTGTCAATGTGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAATGGAGTTGTGGTTGGGGTTATCCCTGATCATGCTCAGAGCTTCCACAAGACCGTCGATGAAGATACGAGTTATAGATCAAGTTCGGGATCGGCCATATCAAACTCGGAGAGCTGTCAACAATTTGGTAGTGCAGATGCAAGTGATCTGACAGGCCCCTCACAGTCAACAGCGTGGGAGACGATAGTGCCCTCGAGAAAGAGGACCTGTGTTGGTCATTCGAAGTCTACTGCAGTTGAGAAACTCACTCAAGATCTATACACGATTTTACGTGAACAGCAGTCTTACTTCTCTGGATCTTCCGAGGAGGATTTGCTTTTTGATAGCGAAACTCCGATGGTCTCTGTAGAGATAGGACATGGAAGCGTTCTCATGAGGCATCCAAGTTCGATTGCTCGAGAAGAGGAGTCGGAAGCAAGCTCGATTTCAGTTGATAATAAACAATTCACCATAAACGAGGTTTATTCAGAGCCCTCCATCCTTCCTGTACATTATGAAGCTGACAACAAGACTGTAAATTTTTCCACTCTTGGAATTGGGAGAAAGCACTCTAATGGACAAGGGTTCTTGCAGGAACAAATTAAAAGGGACAGGCCTCAATCAGAAAAAACGCAAGCACTTGGAAACCGTAACTCGCCGCTCTGTAATATAGATCTAACGGACATTCTCAACTTCAGGGAGTTTACGAAGCAATTGACGAGCGAAGATCAGCAAGAATTAATGAAGTATCTTCCGTCTGTTGATACCGAAGAGCTTCCCGAAAGCTTGAATAGCATGTTTGAAAGCCCTGAATTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTGTTCGATTTCTCCTTTCCGGGTGCGAAAAGAGAAGACTGCCGGAGTTTGAGTAGGCTCGTGTTGTGGGATTTGTCAAAATCGAAATGGGTCGAACGGTATCATTTACTCAAGAAATGTAGCAGTGGAGTGGCTGTTCAAGGATTTGCTGCTGCATCAAGTGGCTTTATGAACGGAAAGAGAGTGCTTGATGGCCAAAACAAAAAGCTTTCAGAAACCAGGACTGCAATGAAGAGTCCCAAAAGGGGGACGACAAAGACGAGCGTGGAAAGCAAGGAACTCGTCGACAGCGACGGTTCTTGCTTCAGTCCAAGAAGTTTATTTGCTTTGCCTTCTGATGGAGGTTCCTTCACACTGGAATCTCTCCATTTCGATGAGGATAGTTCGGACCAGGATCTCCTATTGGATGTGAGGTCGAACAACTCCTTTCCTCAAGCCGAGCTCCTTCATCCGTCCCTGAGTTTCGGTACTCCACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTGTGCATCATTGA 1620 45.62 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARADPDECEDKRVSKWKNLSMCKNKEVKLLKRKQYQDNGVVVGVIPDHAQSFHKTVDEDTSYRSSSGSAISNSESCQQFGSADASDLTGPSQSTAWETIVPSRKRTCVGHSKSTAVEKLTQDLYTILREQQSYFSGSSEEDLLFDSETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFTINEVYSEPSILPVHYEADNKTVNFSTLGIGRKHSNGQGFLQEQIKRDRPQSEKTQALGNRNSPLCNIDLTDILNFREFTKQLTSEDQQELMKYLPSVDTEELPESLNSMFESPEFKENLNSFKQLLTEGVFDFSFPGAKREDCRSLSRLVLWDLSKSKWVERYHLLKKCSSGVAVQGFAAASSGFMNGKRVLDGQNKKLSETRTAMKSPKRGTTKTSVESKELVDSDGSCFSPRSLFALPSDGGSFTLESLHFDEDSSDQDLLLDVRSNNSFPQAELLHPSLSFGTPQASNSSSSVNLRLVHH 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8252858 8259891 - CmoCh16G011590.1 Cmo16g01159 400194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01159 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 539 IPR044589 -
Cmo16g01159 539 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Cmo16g01159 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 405 IPR044867 -
Cmo16g01159 539 Gene3D - 287 372 IPR038108 -
Cmo16g01159 539 PANTHER GATA TRANSCRIPTION FACTOR 26 1 539 - -
Cmo16g01159 539 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Cmo16g01159 539 Gene3D - 3 83 IPR013088 GO:0006355|GO:0008270
Cmo16g01159 539 Pfam Asx homology domain 284 368 IPR028020 -
Cmo16g01159 539 MobiDBLite consensus disorder prediction 110 141 - -
Cmo16g01159 539 MobiDBLite consensus disorder prediction 104 141 - -
Cmo16g01159 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cmo16g01159 539 MobiDBLite consensus disorder prediction 517 539 - -
Cmo16g01159 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cmo16g01159 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01159 - - - csv:101205985 931.398
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01159 Cmo-Chr16:8252858 Cmo19g00407 Cmo-Chr19:4775225 0 dispersed
Cmo16g01159 Cmo-Chr16:8252858 Cmo02g01613 Cmo-Chr2:9274355 5.09E-172 wgd
Cmo16g01159 Cmo-Chr16:8252858 Cmo06g00835 Cmo-Chr6:4586921 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo05g00609 CCT,CST,ECH 78 342 C2C2-Gata Transcription Factor Family AT5G25830 54.3 1.5e-63 240.7
Cmo16g00703 . 28 305 C2C2-Gata Transcription Factor Family AT5G66320 51.4 2.0e-63 240.4
Cmo03g00730 . 98 281 C2C2-Gata Transcription Factor Family AT5G66320 50.5 7.8e-44 175.3
Cmo09g00615 CCT,ECH 34 289 C2C2-Gata Transcription Factor Family AT4G32890 50.6 1.5e-54 210.7
Cmo06g00835 . 1 489 C2C2-Gata Transcription Factor Family AT4G17570 53.8 8.0e-133 471.5
Cmo16g01159 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 52.2 1.4e-132 470.7
Cmo19g00407 . 1 492 C2C2-Gata Transcription Factor Family AT4G17570 51.3 3.0e-127 453.0
Cmo02g01613 . 643 1070 C2C2-Gata Transcription Factor Family AT4G17570 51.5 1.1e-110 397.9
Cmo06g00835 . 1 490 C2C2-Gata Transcription Factor Family AT5G47140 50.4 2.2e-113 406.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11329 PF13919 ASXH 1.10E-09 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01159 Cmo_Chr16 FPKM 12.828077 14.675488 13.451008 13.66993 19.982777 18.46373 18.501688 4.511031 4.267066 4.838046