Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01167 ATGTATGGACAGAGTAATGGCTGTGAATCGGATTTTGTTCTTCTGGAGACCATCCGCCGCCATTTATTGGGAGATTCCGAGCCTTACCGATGTGGGAATTACGCCGTCGCCGGAGCCGCCGCGCCGGGGTTGTGCGGGAGCTCCAATTTCACCAGCTTGTACCCTTGTTTGACTGAAAATTGGGGGGAATTGCCTCTTAAAGTGGATGATTCCGAGGACATGTTTCTCGCCGGAGTACTTCACGACGCCGTCCGCCTTGGTTGGGATCCTCTGCTCGGCTCATCGCCGTCGGAAGCTTTTAATTTTGGATTCTCTGATGTCAAGACAGAGCCCCTGATTCTTTCTCCGGCGAAGGTGGAGGTGGCGGCGGCGACGGTGCCGACGGTGATTCCGGCGAAGGGGAAGCATTATCGGGGTGTACGGCAACGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGTGACCCGGCGAAAAACGGGGCTCGGGTTTGGCTTGGGACGTTTGAGACGGCGGAGTATGCGGCGCTTGCTTATGACCGCGCCGCTTATCGGATGCGGGGCTCCAAAGCTCTTCTTAATTTTCCGCTTAGGGTTAATTCGGGTGAACCCGACCCGGTTAGAGTGACGTCGAAACGGTCGTCGTCTCGGTCTTCGCCGGAGCCTACTTCGTCGTCGTCGTCGGTGGAGAGTGGGTCCCCTAAGCGGCGGAAGAAGGTGGTGGCAGCAACTCAAGCTGCACTAGAGTCAATCCAATTAGTGGTGGGGACCAATGCAACACAAGTGGAAGCTGACGTGGCGAAGAGTACAAATGGCGAGCAATGA 819 56.78 MYGQSNGCESDFVLLETIRRHLLGDSEPYRCGNYAVAGAAAPGLCGSSNFTSLYPCLTENWGELPLKVDDSEDMFLAGVLHDAVRLGWDPLLGSSPSEAFNFGFSDVKTEPLILSPAKVEVAAATVPTVIPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEYAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSSRSSPEPTSSSSSVESGSPKRRKKVVAATQAALESIQLVVGTNATQVEADVAKSTNGEQ 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8316409 8317227 - CmoCh16G011670.1 Cmo16g01167 400202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01167 272 ProSiteProfiles AP2/ERF domain profile. 136 194 IPR001471 GO:0003700|GO:0006355
Cmo16g01167 272 MobiDBLite consensus disorder prediction 200 240 - -
Cmo16g01167 272 SUPERFAMILY DNA-binding domain 136 196 IPR016177 GO:0003677
Cmo16g01167 272 PRINTS Ethylene responsive element binding protein signature 160 176 IPR001471 GO:0003700|GO:0006355
Cmo16g01167 272 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700|GO:0006355
Cmo16g01167 272 Gene3D AP2/ERF domain 135 197 IPR036955 GO:0003700|GO:0006355
Cmo16g01167 272 SMART rav1_2 136 200 IPR001471 GO:0003700|GO:0006355
Cmo16g01167 272 MobiDBLite consensus disorder prediction 205 229 - -
Cmo16g01167 272 CDD AP2 135 194 IPR001471 GO:0003700|GO:0006355
Cmo16g01167 272 Pfam AP2 domain 136 186 IPR001471 GO:0003700|GO:0006355
Cmo16g01167 272 PANTHER DNA-BINDING DOMAIN 39 248 IPR044808 GO:0003700|GO:0009873
Cmo16g01167 272 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 39 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00826 Cmo-Chr6:4490152 Cmo16g01167 Cmo-Chr16:8316409 1.32E-133 dispersed
Cmo07g00206 Cmo-Chr7:1042253 Cmo16g01167 Cmo-Chr16:8316409 1.95E-28 dispersed
Cmo15g01157 Cmo-Chr15:8084427 Cmo16g01167 Cmo-Chr16:8316409 9.59E-80 dispersed
Cmo16g00237 Cmo-Chr16:1045300 Cmo16g01167 Cmo-Chr16:8316409 2.16E-50 dispersed
Cmo16g01167 Cmo-Chr16:8316409 Cmo15g01422 Cmo-Chr15:9684153 8.15E-32 dispersed
Cmo16g01167 Cmo-Chr16:8316409 Cmo16g01168 Cmo-Chr16:8328401 1.08E-29 tandem
Cmo16g01167 Cmo-Chr16:8316409 Cmo02g01608 Cmo-Chr2:9252223 7.35E-94 wgd
Cmo16g01167 Cmo-Chr16:8316409 Cmo06g00825 Cmo-Chr6:4480571 4.97E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11330 PF00847 AP2 1.30E-13 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01167 K09286 - csv:101203663 368.622