Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01171 ATGTATATTGAGAAATTGAAGGAAGAGGAGTTGCAGAGTGGGGAAGAGGGGAATTCAGGTATTATCGTTAGTAATTTGGAGAGCCAAAGCATTGTTAGGTCTGATGTGAAAAGGATCGTTGTTGGAGTTGGGGCTCGTGTTCTTTTCTACCCAACTTTGCTTTACAATGTTTTCAGAAATAAGCTTCAGACGGAGTTTCGATGGTGGGACAAGGTTGATGAGTTCATATTGTTAGGTGCTGTTCCATTCCCTGCGGATGTTCCCTGTTTGAAGGAGGTTGGCGTTCGAGGAGTGATAACACTAAATGAGCCATATGAGACCTTGGTTCCTTCGACTCTATATCGTGAACATGGAATTGATCATCTGACCATTCCGACTAGAGACTATTGCTTTGCACCTTTATTGAGTGACATTTGTGTTGCTGTAAATTTCATCCACAAAAATGCATCACATGGACAGACTACTTATGTTCATTGTAAAGCTGGACGCGGGCGTAGCACAACCATTGTTATTTGCTATTTGGTGCAATACAAGCAAATGACGCCAGAAGAAGCTTATAAACATGTGAAGTCAATCAGGCCAAGGGTGCTTTTAGCACCATCACAGTGGCAGGCTGTCCTGGAATTCTACCGCCTGATTGTGCAGAAGGATGCTTCCTTCTGCCACATAGATGATTTTGGAAAGAAAGTATCAGAATCAGCGCATGATCTCATTGCATTTGACGATAGTTCTGTAGTTGTTGTAAAAGAATCCGATCTTGATGGATATGACGAAAGTAGCAGCCAAAGTGAAATGGGTGATATCTGGGCAGATTTAAGTGTAGTCTGCAGGGTTCGTGTTGCTGGTCAGGCAGCCCTCACAAGATTCTCTTGTTTGTTGCTCAGCTATCGAGCAAAACACCATAGCCAGGAGATTAAAGGAGATGATCCAGGCGTCACGAAGGGCTGTTCACTCAGTGCTACTCATTTGGAAGGGTTCAGTGTGGACATTCATGTCTATTAA 1002 43.31 MYIEKLKEEELQSGEEGNSGIIVSNLESQSIVRSDVKRIVVGVGARVLFYPTLLYNVFRNKLQTEFRWWDKVDEFILLGAVPFPADVPCLKEVGVRGVITLNEPYETLVPSTLYREHGIDHLTIPTRDYCFAPLLSDICVAVNFIHKNASHGQTTYVHCKAGRGRSTTIVICYLVQYKQMTPEEAYKHVKSIRPRVLLAPSQWQAVLEFYRLIVQKDASFCHIDDFGKKVSESAHDLIAFDDSSVVVVKESDLDGYDESSSQSEMGDIWADLSVVCRVRVAGQAALTRFSCLLLSYRAKHHSQEIKGDDPGVTKGCSLSATHLEGFSVDIHVY 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8345053 8348636 - CmoCh16G011710.1 Cmo16g01171 400206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01171 333 SMART dsp_5 71 212 IPR020422 GO:0006470|GO:0008138
Cmo16g01171 333 ProSitePatterns Tyrosine specific protein phosphatases active site. 157 167 IPR016130 GO:0016311|GO:0016791
Cmo16g01171 333 PANTHER - 1 333 - -
Cmo16g01171 333 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 62 214 IPR029021 -
Cmo16g01171 333 ProSiteProfiles Dual specificity protein phosphatase domain profile. 68 215 IPR020422 GO:0006470|GO:0008138
Cmo16g01171 333 CDD PTPMT1 68 211 IPR044596 GO:0004721
Cmo16g01171 333 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 1 333 - -
Cmo16g01171 333 Pfam Dual specificity phosphatase, catalytic domain 88 211 IPR000340 GO:0008138|GO:0016311
Cmo16g01171 333 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 136 204 IPR000387 GO:0016311|GO:0016791
Cmo16g01171 333 Gene3D Protein tyrosine phosphatase superfamily 68 218 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01381 Cmo-Chr5:10685795 Cmo16g01171 Cmo-Chr16:8345053 5.49E-100 dispersed
Cmo12g01314 Cmo-Chr12:11499281 Cmo16g01171 Cmo-Chr16:8345053 9.21E-99 dispersed
Cmo16g01171 Cmo-Chr16:8345053 Cmo08g01140 Cmo-Chr8:7275567 1.54E-07 dispersed
Cmo16g01171 Cmo-Chr16:8345053 Cmo06g00821 Cmo-Chr6:4459681 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01171 - - cmax:111465056 657.136