Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01173 ATGATGGCCGGCAACGACGATGGCCTTGGTTTGAGCCTTGGGTTGAGCTTTGATTCTCATCCCCACCGCCATTTGCAGCTCAATCTCATGCCGTCTTGGACTAATGATGCCTCCTCTGATCGGACTTCGGAAACTGGGCGATCGCTGCTCCGGGGTATTGATGTGAACCGGATTCCGCCGTCGACGGCGGATTGTGAGGAGGAAGCGGCGATGTCGAGCCCGAATAGTACGGTGTCGAGTGTGAGTGGGAAACGGAGTGAACGGGAAACGAACGGCGAGGATCTCGACGGCGATAGAGATTGTTTCAGAGGAATTAGCGATGAAGAAGACGGCGAAACTTCTAGAAAAAAGCTTCGGCTTACTAAAGATCAGTCCGCCGTCTTGGAAGATAGCTTCAAAGAACACAACACTCTCAATCCTAAGCAAAAGCTGGCTCTGGCGAAACAGTTAGGTCTCCGCCCAAGACAAGTCGAAGTCTGGTTCCAAAACAGAAGGGCAAGGACAAAATTGAAGCAAACGGAGGTTGATTGCGAGTTTCTAAAGAGATGCTGTGAGAATCTGACGGATGAGAATAGGCGGTTGCAAAAAGAAGTACAGGAACTGAGAGCACTGAAACTTTCCCCACAATTCTACATGCACATGACCCCACCCACCACCCTTACCATGTGCCCGTCATGCGAGCGTGTCGCGGTCCCACCCTCCACGTCAGCCCCCACTACAGTGACACGAGTGGGCCAGGCCCAGGCCCACCACGCTCGGCCCATCCACATCAACCCGTGGGCCTCCGCCATCCCGGCCCGGCCCTTCAACGCCCTACACCCTCGCTCGTAA 831 54.51 MMAGNDDGLGLSLGLSFDSHPHRHLQLNLMPSWTNDASSDRTSETGRSLLRGIDVNRIPPSTADCEEEAAMSSPNSTVSSVSGKRSERETNGEDLDGDRDCFRGISDEEDGETSRKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSTSAPTTVTRVGQAQAHHARPIHINPWASAIPARPFNALHPRS 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8354962 8356844 - CmoCh16G011730.1 Cmo16g01173 400208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01173 276 Pfam Homeobox associated leucine zipper 171 205 IPR003106 GO:0006355|GO:0043565
Cmo16g01173 276 SUPERFAMILY Homeodomain-like 106 172 IPR009057 -
Cmo16g01173 276 PRINTS Lambda-repressor HTH signature 142 151 IPR000047 GO:0003677
Cmo16g01173 276 PRINTS Lambda-repressor HTH signature 151 167 IPR000047 GO:0003677
Cmo16g01173 276 PANTHER - 6 267 - -
Cmo16g01173 276 Coils Coil 170 207 - -
Cmo16g01173 276 Gene3D - 121 167 - -
Cmo16g01173 276 SMART halz 171 214 IPR003106 GO:0006355|GO:0043565
Cmo16g01173 276 MobiDBLite consensus disorder prediction 32 46 - -
Cmo16g01173 276 MobiDBLite consensus disorder prediction 86 116 - -
Cmo16g01173 276 Pfam Homeodomain 115 169 IPR001356 GO:0003677
Cmo16g01173 276 Pfam HD-ZIP protein N terminus 2 89 IPR006712 GO:0005634
Cmo16g01173 276 ProSiteProfiles 'Homeobox' domain profile. 111 171 IPR001356 GO:0003677
Cmo16g01173 276 MobiDBLite consensus disorder prediction 68 85 - -
Cmo16g01173 276 ProSitePatterns 'Homeobox' domain signature. 146 169 IPR017970 GO:0000981|GO:0006355
Cmo16g01173 276 MobiDBLite consensus disorder prediction 32 116 - -
Cmo16g01173 276 CDD homeodomain 115 172 IPR001356 GO:0003677
Cmo16g01173 276 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 6 267 - -
Cmo16g01173 276 SMART HOX_1 113 175 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01004 Cmo-Chr6:7884147 Cmo16g01173 Cmo-Chr16:8354962 8.24E-105 dispersed
Cmo14g00412 Cmo-Chr14:1958755 Cmo16g01173 Cmo-Chr16:8354962 2.48E-74 dispersed
Cmo14g02213 Cmo-Chr14:15730305 Cmo16g01173 Cmo-Chr16:8354962 1.65E-40 dispersed
Cmo16g01173 Cmo-Chr16:8354962 Cmo17g00902 Cmo-Chr17:8159676 8.47E-69 dispersed
Cmo16g01173 Cmo-Chr16:8354962 Cmo06g00819 Cmo-Chr6:4449890 2.37E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11332 PF04618 HD-ZIP_N 8.00E-22 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01173 K09338 - csv:101223208 439.884