Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01193 ATGTATATTACGAAAAAGAAGTCTAAAGATATAGACGTGTCGAAAGGCGGCAGTGGTGGAGACGGAGAGGAAGAACTCCCGTCGAGTTCGAAGACGAAGAATGTGTACCCTCCCATTGAGACTTTCTGGTTCCCACCCTCGACAGTTGAGGTGACGATGGATGCACCGAAGGGCAGAGGCCTAGGCTCGAAGCTGCTTCACCCGCTAAGGTCACGGAGATCGTCGAGAGGAAGCTTGAAGAGGGCAATGGAAGAGAAACATGATCCAAAGGATGAAGAAGCCGTTGATAAGTTAAGGGAAATGCTTTTTCTCGAGGGCCAATTGCCAACCAAATTCAACGATTATCATACTCTTCTCAGATTCCTAAGGATGAGAGATTTTGATACGACAGCAGCAAAAGACATGTTTTTGAAATTCATCAAATGGCGTGAGGATTTTAGAACCGATGCACTTTCAAAGGGTTTTAAGTTTGAAGAGAAAGAAGAGGTGAAGAAATGGTACCCTCATGGGTACCATGGAGTAGACAAATATGGAAGGCCAATATACATTGAAAGGCTTGGGATGGTTGATCTCAACAAATTGTTGCAAGTAACAACACTTGAGAGATTTGTGAAGTACCATGTTTATGAACAAGAGAAGACTTTGGGCATTAGATATCCTTCATGTTCTATTGAAGCCAAGAAGCACATTGCTTCTACTACAACAATTTTAGACGTCGGTGGTGCGGGGGTGTCTAACTTCTCTAAACCTGCAAGATATCTCTTTACAGAAATTCAGAAGATTGATAGTAATTACTATCCCGAGACATTAAATCGACTATTTATAGTGAACGCTGGGTCGGGGTTTAAGATATTATGGAAAGCATTGAGGGCATTTCTCGATGCTCGCACGTTAGCTAAGATTCATGTTTTGGGGAATAATTTTATTCCCGAGCTACGTGAGATCATCGATCCAAGTAATTTACCAAGTTTCCTTGGTGGAAATTGTTGCTGTTCTGAATATGGAGGCTGCCTTTCAAGTGATAGAGGTCCATGGAACAACCCTGCGATTCTAGCCATGGTTCAGGTTCTCTCTTCGGCTGATGAAACTTATGATAACGAACAAGAAAGTGGTTTGGCTTTGGAAGATGCTCGCCTAGACAATAGAAAAATTGAGGCACTAGAAACCGCACTTGAAGATACCAAAGTGGTTTCCAAATCTGCATCAATGGCTTCTTCGATCGCTCTTCGAAGGCTGGCTGCTAACTCCGCCGCTAAGCTCTTCAATCCTGTTCGCTCAGCTTCTGTTCTCCCCTCTGTCGGTCGTTCGTTCAACACTAATGCTCAGATGACCAGCTACAATGACGACGAACGCTCCGTTGATGTGGACCGCCGCTCTGACCGCTCTCTGTCTCGTTCTTATGATCGCTTTCCTGGTTTCGCAGATGTGTTCGATCCGTTTTCTCCTACACGAAGCCTAAGCCAGGTTCTGAATCTGATGGATCAGTTCATGGAGGATCCGTTTCTGGCAGCTTCACGAGGAGTAGGAGCAGGATCAAGGAGGGGATGGGACGTGAGAGAAGATGACGACGCTCTGTATCTACGAATGGACATGCCTGGACTGAGCAAAGAAGATGTGAAGGTGAGTGTGGAGCAGAACACACTCATTATCAAAGGCGAGGCTGCTAAAGAATCTGAGGACGAATCTGATCGGAGACGATTCTCGAGCCGACTCGATTTGCCTGCTAACCTCTATCAGCTGGATTCAATCAAAGCAGAGATGAAGAATGGAGTTCTGAAAGTAGCTGTGCCAAAGGTGAAGGAAGAAGAGAGAAAGGATGTGAAGCAAATTACTGTCGAGTAG 1842 45.11 MYITKKKSKDIDVSKGGSGGDGEEELPSSSKTKNVYPPIETFWFPPSTVEVTMDAPKGRGLGSKLLHPLRSRRSSRGSLKRAMEEKHDPKDEEAVDKLREMLFLEGQLPTKFNDYHTLLRFLRMRDFDTTAAKDMFLKFIKWREDFRTDALSKGFKFEEKEEVKKWYPHGYHGVDKYGRPIYIERLGMVDLNKLLQVTTLERFVKYHVYEQEKTLGIRYPSCSIEAKKHIASTTTILDVGGAGVSNFSKPARYLFTEIQKIDSNYYPETLNRLFIVNAGSGFKILWKALRAFLDARTLAKIHVLGNNFIPELREIIDPSNLPSFLGGNCCCSEYGGCLSSDRGPWNNPAILAMVQVLSSADETYDNEQESGLALEDARLDNRKIEALETALEDTKVVSKSASMASSIALRRLAANSAAKLFNPVRSASVLPSVGRSFNTNAQMTSYNDDERSVDVDRRSDRSLSRSYDRFPGFADVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDDDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQLDSIKAEMKNGVLKVAVPKVKEEERKDVKQITVE 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8503803 8513866 + CmoCh16G011930.1 Cmo16g01193 400228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01193 613 SUPERFAMILY HSP20-like chaperones 483 606 IPR008978 -
Cmo16g01193 613 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 28 401 - -
Cmo16g01193 613 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 507 613 IPR002068 -
Cmo16g01193 613 SUPERFAMILY CRAL/TRIO domain 158 352 IPR036865 -
Cmo16g01193 613 SMART sec14_4 159 330 IPR001251 -
Cmo16g01193 613 CDD ACD_sHsps-like 517 598 - -
Cmo16g01193 613 CDD SEC14 170 328 IPR001251 -
Cmo16g01193 613 MobiDBLite consensus disorder prediction 71 92 - -
Cmo16g01193 613 Pfam Hsp20/alpha crystallin family 517 612 IPR002068 -
Cmo16g01193 613 SUPERFAMILY CRAL/TRIO N-terminal domain 85 152 IPR036273 -
Cmo16g01193 613 MobiDBLite consensus disorder prediction 77 92 - -
Cmo16g01193 613 MobiDBLite consensus disorder prediction 1 33 - -
Cmo16g01193 613 Pfam CRAL/TRIO domain 169 327 IPR001251 -
Cmo16g01193 613 MobiDBLite consensus disorder prediction 1 19 - -
Cmo16g01193 613 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 28 401 - -
Cmo16g01193 613 Gene3D - 72 146 - -
Cmo16g01193 613 SMART CRAL_TRIO_N_2 114 139 IPR011074 -
Cmo16g01193 613 Gene3D - 473 613 IPR008978 -
Cmo16g01193 613 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 159 333 IPR001251 -
Cmo16g01193 613 Gene3D - 148 357 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01193 - - - bhj:120091620 637.876
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00800 Cmo16g01193 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01193 Cmo-Chr16:8503803 Cmo20g00842 Cmo-Chr20:4232680 9.98E-114 dispersed
Cmo15g01062 Cmo-Chr15:6921213 Cmo16g01193 Cmo-Chr16:8503803 5.03E-22 transposed
Cmo16g01193 Cmo-Chr16:8503803 Cmo06g00800 Cmo-Chr6:4285176 6.67E-123 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g533 . . . Bda08g00575 . . . . Cmo06g00800 Cmo16g01193 . . . . Sed04g1717 . . Bhi11g00196 Tan01g2027 Cmetu06g0652 . . . . . . . . . . . . . . . Lsi07g01303 . . Cme06g02574 . . . . . . . . . . . Cma06g00780 . Car06g00694 . Cpe08g00743 . . . . . . . . . . . . . . . . Csa03g00277 Chy06g02045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009123 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01193 Cmo_Chr16 FPKM 26.17985 28.349947 28.600147 26.327322 34.034142 36.148064 34.20171 37.567207 37.335384 32.839855