Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01195 ATGAGGGGGATTTCCTTTCATTTTCAGGGGAAGGGGGACTTGGAAATTTCAGCCGCGTTATCTTCTTCTCCGATTTGCTCTGGTTTTGCAGAAAAGTGGGTTAAGAAAGGGGAAGAACACCAAGAACTCGAAGAACAACAAGAAGGGTTTTCTTATTTTCTTTTACCCAACAACGAACCCACTTCCGTTCTTCATATGAGAAGCCCCAGTCCTCCCACATCGGTTTCCACTCTCTCTTCTTCCTTTGGCGGTGGCGGTGGCGGTGGCGGTGGTTGTGTTCCTTCACTTCCTCCGGAGACCCCTTCTGTTGAGCCGCTCGCCGGAGCTGGTGTTGGGAACGCCATTTTTTCTAGTGGATTGGAGGATTTGGAGAGTATGTGGTCGGAAACTGCCGGCCCTGAACAGTCGTTTCTCCGATGGATCGCCGGGGATGTTGAAGATTCCAGTATGGGGAGTAAAAACCCCTTTGATTTGGATGGCAATGCCGGTATCGGAATTGTCGAACAGGGTTCTGAATTCGGCGGCGGAGCTGGTAATGTTCTTGCTAACATTAATCCTAATTTATCGTTTCCTGTTCCTGCTTGTGGGGGGGCTAATTACAAGAGTTCTAGTTTGGGGATGAACAATCGCCATGGGAATTTGAATCTTCAGAGCCCTATCTTTAATGGGTCTCTTGAAAATCTTGTTGTTCCTGTTTCTGGTTTGATTCAGCCATTTGAGCGCCCTGATGAGAAGCCCCAGAGTTTGAATGCTGCTCAGGTTTTGTTGAACCAGCACCAGCCCCCTCAGAATCCTAGCTTCTTTGTGCCATTGATGTTTGGTCAACAAGAACAGCAGCTCCAGCCTCAGCTGAAGAGGCACAATTCGAGCGGAGCACTCGACGCGAACCCGAACGGGTCGATACCGATACCGAATGAGATTTTGATGAGGAATCATCAGGTGCAGGTGTTGCAGCAGCAGCAGCAGCAGCAGCAGCTTGGTTATGCACCTGGTTTGCAGTGTCTTCCTCAGCAGAAGGCAATGTCTCCGAAGCCGAAAGTTGTAGGGCTTGGCGACGAAATGGTTTATAACAATCCCCCACAGCAACAGCAACATGCTTTGCTCGACCAGCTCTACAAGGCGGCGGAGCTGGTCGGGACTGGGAACTTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCTATTGGAAAGCCCCTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCTCTTCAATTGCTCCTCCTTATGAACAACCCGGTTAATCCTCCTCCACCTCGCTGCCCGACACCGTTCGATGTGATCTTTAAGATGGGTGCTTACAAGGTGTTTTGCGAAATCTCCCCACTTGTTCAGTTTGTGAATTTCACCTGCAATCAGGCACTGCTCGAGGCTCTCGACGACGTTGGTCGAATTCACATTGTAGATTTTGATATTGGTTTTGGAGCACAATGGGCTTCTTTTATGCAGGAACTGTCCTTGAGGAACCAGGGTGCATCACTCAAAATCACTGCTTTTGCCTCTCCCTCGACTCATCATCCGATCGAACTCGGGCTTATGCGCGAAAATCTCACTCAATTTGCTAATGACATTGGGATAAGTTTCGAGTTCGAAATGATCAACTTCGATTCCTTGAACCAGAACTCCTTTTCGTTGCCATTTTCTCGAGCAAACGAAAACGAGGCTATTGCAGTAAACTTCCCTCTATGTTCGACATCGAATCAACCAGCATTACTTCCATCTCTCCTCCGTTTCATCAAACAACTCTCACCAAAACTCGTGGTTTCACTCGACCGAGGGTGCGATCGAAGTGACCTCCCATTTCCTCAGCATATGCTTCAGGCACTTCAATCCTACATTAACCTCCTGGAATCTCTGGATGCTATTAATATGAACTCGGACGCTGTGAACAAGATCGAGAGGTTTCTTTTGCAACCGAGAATCGAAAGCACTGTTCTGGGGCGGCTTCGAGCGCCTGAAAGAATGCCCCTTTGGAAAACACTCTTTGCCTCTGCTGGCTTTACACCAGTAAACTTCAGCAACTTCACTGAAACTCAAGCAGAATGTGTAGCAAAGAGAACTTCTGTGAGGGGATTTCACGTCGAGAAACGGCAGGCTTCCCTAGTTTTATGCTGGCAGCGTCGGGAGCTCATCTCCGCTTCGGCCTGGAGATGTTGA 2190 49.0 MRGISFHFQGKGDLEISAALSSSPICSGFAEKWVKKGEEHQELEEQQEGFSYFLLPNNEPTSVLHMRSPSPPTSVSTLSSSFGGGGGGGGGCVPSLPPETPSVEPLAGAGVGNAIFSSGLEDLESMWSETAGPEQSFLRWIAGDVEDSSMGSKNPFDLDGNAGIGIVEQGSEFGGGAGNVLANINPNLSFPVPACGGANYKSSSLGMNNRHGNLNLQSPIFNGSLENLVVPVSGLIQPFERPDEKPQSLNAAQVLLNQHQPPQNPSFFVPLMFGQQEQQLQPQLKRHNSSGALDANPNGSIPIPNEILMRNHQVQVLQQQQQQQQLGYAPGLQCLPQQKAMSPKPKVVGLGDEMVYNNPPQQQQHALLDQLYKAAELVGTGNFSHAQGILARLNHQLSPIGKPLQRAAFYFKEALQLLLLMNNPVNPPPPRCPTPFDVIFKMGAYKVFCEISPLVQFVNFTCNQALLEALDDVGRIHIVDFDIGFGAQWASFMQELSLRNQGASLKITAFASPSTHHPIELGLMRENLTQFANDIGISFEFEMINFDSLNQNSFSLPFSRANENEAIAVNFPLCSTSNQPALLPSLLRFIKQLSPKLVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAINMNSDAVNKIERFLLQPRIESTVLGRLRAPERMPLWKTLFASAGFTPVNFSNFTETQAECVAKRTSVRGFHVEKRQASLVLCWQRRELISASAWRC 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8521675 8523864 - CmoCh16G011950.1 Cmo16g01195 400230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01195 729 PANTHER SCARECROW-LIKE PROTEIN 6 36 728 - -
Cmo16g01195 729 MobiDBLite consensus disorder prediction 65 83 - -
Cmo16g01195 729 Pfam GRAS domain family 368 728 IPR005202 -
Cmo16g01195 729 ProSiteProfiles GRAS family profile. 358 728 IPR005202 -
Cmo16g01195 729 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 36 728 IPR005202 -
Cmo16g01195 729 MobiDBLite consensus disorder prediction 65 100 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00799 Cmo16g01195 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00832 Cmo-Chr8:5334318 Cmo16g01195 Cmo-Chr16:8521675 4.63E-164 dispersed
Cmo16g00706 Cmo-Chr16:3517368 Cmo16g01195 Cmo-Chr16:8521675 1.99E-67 dispersed
Cmo16g01195 Cmo-Chr16:8521675 Cmo17g00454 Cmo-Chr17:3141301 2.35E-150 dispersed
Cmo16g01195 Cmo-Chr16:8521675 Cmo06g00799 Cmo-Chr6:4278969 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11336 PF03514 GRAS 3.10E-91 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01195 - - csv:101218630 1165.98