Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01198 ATGGGTTGCACGGTGAGAGATAAGCATGTTCGTACGAATCGGAGGTCTCGATCGGTAAAACCCGAATTCGATCCGTGTTGTCACCAAGAACGAGCTTCACTTCCCAAATCTGTACTTGAATCGGGTTCGAAGCCGTTGGATTATCATATTGGGCTTGACGATTCGAACGAGGATAACGCTGTTACCTCGAACTGTAATTCCGGTTCTAGCTTGGATGATCTTGGATGGGGTTACTGTACGGAGGAGCAATTGGAGGAAATTTTGATGAAGAATTTGCAATTTGTTTATACTGAAGCTCTTTCGAAGCTTGTTGCATTGGGTTATGATGAGGATGCTGCGATGAGGGCGATTTTGCAAAATGGGCATTGCTATGGTACCATGGATGTTCTAACAAATGTGCTGCATAATTCGCTGTCGTTTTTGAATGGTAACAACAACTCTGATAGTGCTAGCAGCGAGGCTGTTGCAGCTGCTGCTGCCGCTGCCGCTGCCGCTTCTGCTGATGGTGTTGGTATTGGAACCATCGGTATTGGACCCATCGGTAATGGTAATGGTAATGGTATTGCTATTGATAGTGTTAATGCTAATGCTAATTTGGTTGTGGATGATCCTGAGCCTGCGTTCTCTGATATAAGGCAATTGCAGGAGTATTCTTTGGCAGGTATGGTATGTTTGTTGCAACAAGTTAGGCCACATTTGACTAAAGGAGATGCTATGTGGTGTTTGCTTATGAGTGATCTTCATGTCGGTCGAGCAAGCACCATGGAAATTCCGGTGCTTCCTTCAGCACCAAGTAATGTTAATGGGCCAGCATCTGGTGCCAATGGTGAGAATGTTAGTAACCAACCAGTGGGATTTTTGGAACCATCCCTTTGTAAATTTCATGGTGGTTCTGGTTTTGGAAATAGTGGAGGTTCTGAATTCTCTGCTAATGGTTTTCTGTCTTATCCTCCTGAAATGGATTTGCATAGAGATATTGAGTGTCCAAAGAGGTTTAATCTTTCTCCTTCAATGAAGTCATTGTTGAAGAGGAATGTGGCTGCATTTGCTGCTGGTTTTCGAGCAAACTCGAAACACCTTACAGCACAGACTCAAGCTTGTGCAACTGTCTTGCCAAGTGAAATTCCTCCTGTCGTACAAGGTGCTTCGGTAGTTCCAGTGGAGAAAATTGAGGAGTCCCAGATTCCAAAGAACCAAGATGCTGTAAATTCAATGTTGAATAAATTTCGCGATTTGAAGATTTATGAGAATTTGGATTTTGTGGCAGACGATAAAAAGGATGAAGTGATTGTAAATCTCTTGCATCAGATTAAAGAGCTCGAGAGACAAGTGAAGGAGCGGAAAGATTGGGCGCATCAAAAGGCAATGCAAGCTGCTAGGAAATTGAGTCATGATCTCACCGAGCTTAAAACGTTGAGGATGGAAAGGGAAGAGACGCAACGCCTGAAAAATGGCAAACCGACTTTGGAGGACACAACAATGAAACGGCTATCTGAGATGGAGAATGCGTTGAGAAAGGCCAGTGGTCAGGTGGACCGTGCAAATTCGACAGTACGACGACTTGAGACAGAAAATGCAGAAATTAGAGCAGAGATGGAAGCTTTAAAGTTAAGTGCCTCCGAGTCTGTCACAACTTGTTTGGAGGTTGCAAAGAGGGAGAAAAAAAGCTTAAAGAGACTATTGGCCTGGGAAAAGCAAAAAACAAAATTACAGGAGCAGATTGCAGAGGAGAAGGAGAAGATTTCAAGGTTGCAAGATGAAATGGAGATGATCAAGGTAGCTCAAAAAGAGGCTGAGGCTAGGTGGAGGCAGGAGTTGAATGCTAAGGAAGCTGCCATGACACAAGTGGAAGACGAAAGACTTCGTAAAGAAGCAGCGGAGGCGAGTAGTAAAAGAAAGCTCGAGGCATTACGACTTAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTCCAAAGGCTCGAACAAGAACTTTTGCGTCTAAAGGCATCTGCACAATCTATTGACTCACACCAACCCTCCAATAACACACCTAGAGGGAATTCCGAGGGCGTAAAACCCCAGGGAGAAACGATTGCGAAAATGCTTCGGGAATTAGATAGCTATGAGGAATCAACAGAGGAAGACGTCAACCACGACCGCGAATGCATGATATGTATGAGAGGTGAGGTCTCCATTGTTTTCTTACCTTGCGCTCACCAAGTTGTGTGTGCGAGTTGCAGTGATAGTTACGGGAAAAAGGGTAAAGCAGCATGCCCATGTTGTCGGGTTCCGATAGAACAGAGAATCCGAGTTTTTGGTGCGAGTTCATAG 2316 44.47 MGCTVRDKHVRTNRRSRSVKPEFDPCCHQERASLPKSVLESGSKPLDYHIGLDDSNEDNAVTSNCNSGSSLDDLGWGYCTEEQLEEILMKNLQFVYTEALSKLVALGYDEDAAMRAILQNGHCYGTMDVLTNVLHNSLSFLNGNNNSDSASSEAVAAAAAAAAAASADGVGIGTIGIGPIGNGNGNGIAIDSVNANANLVVDDPEPAFSDIRQLQEYSLAGMVCLLQQVRPHLTKGDAMWCLLMSDLHVGRASTMEIPVLPSAPSNVNGPASGANGENVSNQPVGFLEPSLCKFHGGSGFGNSGGSEFSANGFLSYPPEMDLHRDIECPKRFNLSPSMKSLLKRNVAAFAAGFRANSKHLTAQTQACATVLPSEIPPVVQGASVVPVEKIEESQIPKNQDAVNSMLNKFRDLKIYENLDFVADDKKDEVIVNLLHQIKELERQVKERKDWAHQKAMQAARKLSHDLTELKTLRMEREETQRLKNGKPTLEDTTMKRLSEMENALRKASGQVDRANSTVRRLETENAEIRAEMEALKLSASESVTTCLEVAKREKKSLKRLLAWEKQKTKLQEQIAEEKEKISRLQDEMEMIKVAQKEAEARWRQELNAKEAAMTQVEDERLRKEAAEASSKRKLEALRLKIEIDFQRHKDDLQRLEQELLRLKASAQSIDSHQPSNNTPRGNSEGVKPQGETIAKMLRELDSYEESTEEDVNHDRECMICMRGEVSIVFLPCAHQVVCASCSDSYGKKGKAACPCCRVPIEQRIRVFGASS 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8558796 8563102 - CmoCh16G011980.1 Cmo16g01198 400233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01198 771 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 768 IPR013083 -
Cmo16g01198 771 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 770 - -
Cmo16g01198 771 MobiDBLite consensus disorder prediction 666 689 - -
Cmo16g01198 771 Coils Coil 638 672 - -
Cmo16g01198 771 ProSiteProfiles Zinc finger RING-type profile. 717 757 IPR001841 -
Cmo16g01198 771 SUPERFAMILY RING/U-box 708 763 - -
Cmo16g01198 771 MobiDBLite consensus disorder prediction 666 685 - -
Cmo16g01198 771 Pfam Zinc finger, C3HC4 type (RING finger) 714 762 - -
Cmo16g01198 771 PANTHER OS05G0141500 PROTEIN 1 770 IPR046934 -
Cmo16g01198 771 Pfam Family of unknown function (DUF6592) 91 253 IPR046527 -
Cmo16g01198 771 MobiDBLite consensus disorder prediction 1 22 - -
Cmo16g01198 771 Coils Coil 547 629 - -
Cmo16g01198 771 Coils Coil 497 538 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01198 - - - csv:101203508 1221.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo15g01233 Cmo16g01198 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00873 Cmo-Chr6:4976925 Cmo16g01198 Cmo-Chr16:8558796 0 dispersed
Cmo06g01449 Cmo-Chr6:10471969 Cmo16g01198 Cmo-Chr16:8558796 6.27E-12 dispersed
Cmo16g01198 Cmo-Chr16:8558796 Cmo10g00269 Cmo-Chr10:1183016 6.04E-10 dispersed
Cmo16g01198 Cmo-Chr16:8558796 Cmo14g01705 Cmo-Chr14:13384774 2.03E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g469 . . Bda06g00053 . . Bpe07g00146 . . . Cmo16g01198 Cma02g01509 Cma15g01171 . Car15g01060 . Cpe14g00951 . . . . . . . . . . . . . . . Cone8ag0358 Cone12ag0350 . . . Csa05g00366 Chy09g01142 . . . . . . . . Bma12g00130 . . Cmo15g01233 . Cma16g01147 . Car16g01144 . . Bhi12g00364 . . . . . . . . . . . . . Lsi09g00370 . . Cme09g01674
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005960 1 2 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01198 Cmo_Chr16 FPKM 9.912418 9.914667 18.841648 18.493631 7.229899 6.658819 6.882875 39.012398 42.222633 42.272411