Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01202 ATGGCTGGGTTGGATTTAGGAAGCCGATATCTAAATCACCTTCAAACGGGTGTAGATGATCCACTAAATCGCGGTGGTCATTTCTCCTCCGGCGACCACGACGACGACGACGATCCCCACCAAACCCTAGGTGGTCCGGGAGATGTGGTTGGCCGCCGCCCACGCGGCCGGCCACCAGGTTCCAAAAACAAGCCAAAGCCGCCAGTAATCATCACCCGAGAGAGCGCCAACACACTACGTGTCCACATCTTAGAGGTTGGCAGCGGCTGCGACATCTTTGATTGCATCGCCGCCTATGCTCGCCGGCGGCAGCGTGGGATCTGTATTCTGAGCGGTAGTGGAAACGTCACCAACGTCGGCCTCCGTCAGCCAGCGTCGGCAGGGGCGGTGCTAACACTTCAAGGGAGGTTTGAGATTTTGTCACTCTCCGGATCGTTTCTTCCGCCGCCTGCTCCACCGGGTGCCACTAGTTTGACAATATTTCTCGCCGGAGGACAAGGGCAGGTGGTGGGAGGAACGGTGGCCGGAGAATTAACGGCGGCAGGGCCAGTGATTTTGATTGCAGCTTCTTTTACTAATGTGGCGTATGAAAGATTACCACTTGATGAGGAGGATCAGCAGCAAGCTCCGACAGGCAGCGGCGGAGGTGGCGGCGGCAGCGGTGGCGGAGTGGGTAACAACAACAACAATAACCCATTTCAAGACCCATCAAATTCAGGCCTTCCATTCTTGAATTTGCCACTTCATATGCAAAATGTTCAACTTCCACCCTTTTGA 777 55.34 MAGLDLGSRYLNHLQTGVDDPLNRGGHFSSGDHDDDDDPHQTLGGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDIFDCIAAYARRRQRGICILSGSGNVTNVGLRQPASAGAVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQAPTGSGGGGGGSGGGVGNNNNNNPFQDPSNSGLPFLNLPLHMQNVQLPPF 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8602724 8603500 + CmoCh16G012020.1 Cmo16g01202 400237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01202 258 MobiDBLite consensus disorder prediction 15 70 - -
Cmo16g01202 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 40 257 - -
Cmo16g01202 258 MobiDBLite consensus disorder prediction 26 42 - -
Cmo16g01202 258 CDD DUF296 80 191 IPR005175 -
Cmo16g01202 258 MobiDBLite consensus disorder prediction 205 243 - -
Cmo16g01202 258 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 193 IPR005175 -
Cmo16g01202 258 ProSiteProfiles PPC domain profile profile. 76 213 IPR005175 -
Cmo16g01202 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 257 IPR014476 GO:0003680
Cmo16g01202 258 MobiDBLite consensus disorder prediction 222 243 - -
Cmo16g01202 258 Gene3D - 79 208 - -
Cmo16g01202 258 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 207 - -
Cmo16g01202 258 PIRSF ESCAROLA 8 256 IPR014476 GO:0003680
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo16g01202 Cmo19g00257 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01202 Cmo-Chr16:8602724 Cmo17g00057 Cmo-Chr17:290693 9.75E-89 dispersed
Cmo16g01202 Cmo-Chr16:8602724 Cmo19g00257 Cmo-Chr19:1873601 1.20E-91 wgd
Cmo16g01202 Cmo-Chr16:8602724 Cmo02g01651 Cmo-Chr2:9524324 1.78E-92 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01202 - - csv:101210132 374.4