Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g01208 | ATGACGGATTATCGTTTGTCGACGATGAATCTTTGGACCGACGAGAACGCGTCGTTGATGGACGCCTTTATGAACTCCGATCTCTCCTCTTACTGGGCTCCATCGGCTGCGTCGTCTCATTCTCTTCACAACCAACCGCCGCCGCAGTCCTCCGCCTCAACTTCCACACCGCCGCCGGATCCCCCTAAATCCGTCGCCGTTTTCAATCAGGAGACTCTGCAGCAGCGTCTCCAGGCGCTGATCGACGGCGCCAGGGAGAGCTGGACTTATGCGATTTTCTGGCAGTCGTCGTACGATTACCCCGATGGGTCGGTTTTGGGGTGGGGAGATGGGTATTACAAAGGGGAGGAGGATAAAGGGAAGGGAAAGGCGAAAGTAGTGACGTCGGCGGCTGAGCAAGCTCACCGGAAGAAGGTTCTCCGGGACCTTAACTCTTTGATTTCTGGATCCGCCGCCGGACCGGACGATGCGGTGGATGAGGAGGTTACGGATACGGAGTGGTTCTTTTTGGTTTCCATGACTCAGTCGTTTGTTAATGGAGTTGGGTTACCGAGTCAGGCGTTCTTTGACTCGACCCCGATTTGGATCTCCGGCGCTGATCGGTTGTCGGCGTCGGCCTGTGAACGGGCAAGACAGGGGAAGGTTTTTGGGTTACAGACGATGGTTTGTATTCCTTCTCCAAACGGCGTTGTCGAAATGGGTTCGACGGAATTGATTCACCGGACGTCCGATTTGATGAACAAAGTCAAGATTCTGTTCAATTTCAACAATCTTGAAACGAGTTCTTGGATATCGGGAACCACCGCCGCTGCTTCCACTGCCGATGAAGGGGAAAACGACCCGTCGTCGATGTGGATTAGTGAGCCGTCGAGTACAATCGCCACCACCGTCCCTTCCGGCGACGTTCCGAGGAAGCTAACCCAATCGGAAAATCATAAACAGAGCCAAAGCTTCTTAAACTTCTCCGACTACGGATTCGAATCAAATCCATCAAAGAGCATCACCACCGACACAACCACCACCACTACCACCACCAACACCCCGTCATTCAAGCCGGAATCCGGCGGGATGCTGAACTTCGGCAGCGGAAATATCTTTTCCAGCCACTCACAGTACATAACAGACGAACAGAACGAAAAAAAGAGATCCCCTCCTTCTAGAAGTAGCAACGACGAAGGAATCCTCTCTTTCACCTCCGGCGTGATCTTACCCTCCTCCGGGAAAGTAAAATCCGGCGACTCCGACCACTCAGATCTGGAAGCTTCCGTGATCAGAGAAGTCGATAGCTGTACAAAATCCATAGAACCGGAAAAACGACCGAGAAAACGAGGCAGAAAACCAGCAAACGGAAGAGAAGAGCCATTGAATCACGTAGAAGCAGAGAGACAACGACGAGAGAAATTAAACCAGAAATTCTACGCTCTCCGAGCCGTAGTTCCAAACGTATCTAAAATGGACAAGGCCTCGCTGCTCGGCGACGCAGTTTCATACATCAACGAGCTCAAATCGAAGCTCCAAATCATAGAAACAGAGAAAACAGAGATGGGAAACCATCTAGAGTTCATCAAGAAGGAGATGGGAGGGAAAGATCTAGGGCATTACACAAACACAATCGATCAAGATCTAAAAACAGGGAACAGAAAAGTAATGGATATAGAGATCGAGGTTAAAATCATGGGATGGGACGCAATGATACGGATTCAAAGCAGTAAGAAGAATCATCCGGCGGCGAGATTGATGACGGCGTTGAAGGATTTGGATTTGGAAATGCTTCATGCGAGTGTGTCTGTAGTGAATGACCTGATGATTCAACAGGCGACGGTGAAGATGGGGAGCAGATGTTACACGCAGGAGCAGCTGAAAATGGCTCTGATCGCCCGGGTCGGCGGCGGCGGAATGATGTAG | 1905 | 50.92 | MTDYRLSTMNLWTDENASLMDAFMNSDLSSYWAPSAASSHSLHNQPPPQSSASTSTPPPDPPKSVAVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYPDGSVLGWGDGYYKGEEDKGKGKAKVVTSAAEQAHRKKVLRDLNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFVNGVGLPSQAFFDSTPIWISGADRLSASACERARQGKVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETSSWISGTTAAASTADEGENDPSSMWISEPSSTIATTVPSGDVPRKLTQSENHKQSQSFLNFSDYGFESNPSKSITTDTTTTTTTTNTPSFKPESGGMLNFGSGNIFSSHSQYITDEQNEKKRSPPSRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKSIEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQIIETEKTEMGNHLEFIKKEMGGKDLGHYTNTIDQDLKTGNRKVMDIEIEVKIMGWDAMIRIQSSKKNHPAARLMTALKDLDLEMLHASVSVVNDLMIQQATVKMGSRCYTQEQLKMALIARVGGGGMM | 634 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 8631197 | 8633101 | - | CmoCh16G012080.1 | Cmo16g01208 | 400243 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g01208 | 634 | Pfam | Helix-loop-helix DNA-binding domain | 456 | 501 | IPR011598 | GO:0046983 | |
Cmo16g01208 | 634 | MobiDBLite | consensus disorder prediction | 293 | 314 | - | - | |
Cmo16g01208 | 634 | MobiDBLite | consensus disorder prediction | 411 | 462 | - | - | |
Cmo16g01208 | 634 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 455 | 520 | IPR036638 | GO:0046983 | |
Cmo16g01208 | 634 | MobiDBLite | consensus disorder prediction | 388 | 405 | - | - | |
Cmo16g01208 | 634 | Gene3D | - | 444 | 527 | IPR036638 | GO:0046983 | |
Cmo16g01208 | 634 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 73 | 253 | IPR025610 | - | |
Cmo16g01208 | 634 | MobiDBLite | consensus disorder prediction | 329 | 462 | - | - | |
Cmo16g01208 | 634 | MobiDBLite | consensus disorder prediction | 37 | 63 | - | - | |
Cmo16g01208 | 634 | PANTHER | MYC | 11 | 628 | IPR045084 | GO:0003700|GO:0006355 | |
Cmo16g01208 | 634 | SMART | finulus | 458 | 507 | IPR011598 | GO:0046983 | |
Cmo16g01208 | 634 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 452 | 501 | IPR011598 | GO:0046983 | |
Cmo16g01208 | 634 | MobiDBLite | consensus disorder prediction | 329 | 353 | - | - | |
Cmo16g01208 | 634 | CDD | bHLH_AtAIB_like | 449 | 525 | - | - | |
Cmo16g01208 | 634 | PANTHER | TRANSCRIPTION FACTOR MYC2 | 11 | 628 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo16g01208 | Cmo19g00251 | CCT | |
Cmo02g01657 | Cmo16g01208 | CCT | |
Cmo06g00657 | Cmo16g01208 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo16g01208 | Cmo-Chr16:8631197 | Cmo19g00079 | Cmo-Chr19:435281 | 3.36E-13 | dispersed | |
Cmo17g00410 | Cmo-Chr17:2712186 | Cmo16g01208 | Cmo-Chr16:8631197 | 3.10E-22 | transposed | |
Cmo16g01208 | Cmo-Chr16:8631197 | Cmo19g00251 | Cmo-Chr19:1832010 | 0 | wgd | |
Cmo16g01208 | Cmo-Chr16:8631197 | Cmo02g01657 | Cmo-Chr2:9546095 | 0 | wgd | |
Cmo16g01208 | Cmo-Chr16:8631197 | Cmo06g00657 | Cmo-Chr6:3318070 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11337 | PF14215 | bHLH-MYC_N | 1.10E-52 | CL0161 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g01208 | K13422 | - | csv:101205372 | 1056.97 |