Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01208 ATGACGGATTATCGTTTGTCGACGATGAATCTTTGGACCGACGAGAACGCGTCGTTGATGGACGCCTTTATGAACTCCGATCTCTCCTCTTACTGGGCTCCATCGGCTGCGTCGTCTCATTCTCTTCACAACCAACCGCCGCCGCAGTCCTCCGCCTCAACTTCCACACCGCCGCCGGATCCCCCTAAATCCGTCGCCGTTTTCAATCAGGAGACTCTGCAGCAGCGTCTCCAGGCGCTGATCGACGGCGCCAGGGAGAGCTGGACTTATGCGATTTTCTGGCAGTCGTCGTACGATTACCCCGATGGGTCGGTTTTGGGGTGGGGAGATGGGTATTACAAAGGGGAGGAGGATAAAGGGAAGGGAAAGGCGAAAGTAGTGACGTCGGCGGCTGAGCAAGCTCACCGGAAGAAGGTTCTCCGGGACCTTAACTCTTTGATTTCTGGATCCGCCGCCGGACCGGACGATGCGGTGGATGAGGAGGTTACGGATACGGAGTGGTTCTTTTTGGTTTCCATGACTCAGTCGTTTGTTAATGGAGTTGGGTTACCGAGTCAGGCGTTCTTTGACTCGACCCCGATTTGGATCTCCGGCGCTGATCGGTTGTCGGCGTCGGCCTGTGAACGGGCAAGACAGGGGAAGGTTTTTGGGTTACAGACGATGGTTTGTATTCCTTCTCCAAACGGCGTTGTCGAAATGGGTTCGACGGAATTGATTCACCGGACGTCCGATTTGATGAACAAAGTCAAGATTCTGTTCAATTTCAACAATCTTGAAACGAGTTCTTGGATATCGGGAACCACCGCCGCTGCTTCCACTGCCGATGAAGGGGAAAACGACCCGTCGTCGATGTGGATTAGTGAGCCGTCGAGTACAATCGCCACCACCGTCCCTTCCGGCGACGTTCCGAGGAAGCTAACCCAATCGGAAAATCATAAACAGAGCCAAAGCTTCTTAAACTTCTCCGACTACGGATTCGAATCAAATCCATCAAAGAGCATCACCACCGACACAACCACCACCACTACCACCACCAACACCCCGTCATTCAAGCCGGAATCCGGCGGGATGCTGAACTTCGGCAGCGGAAATATCTTTTCCAGCCACTCACAGTACATAACAGACGAACAGAACGAAAAAAAGAGATCCCCTCCTTCTAGAAGTAGCAACGACGAAGGAATCCTCTCTTTCACCTCCGGCGTGATCTTACCCTCCTCCGGGAAAGTAAAATCCGGCGACTCCGACCACTCAGATCTGGAAGCTTCCGTGATCAGAGAAGTCGATAGCTGTACAAAATCCATAGAACCGGAAAAACGACCGAGAAAACGAGGCAGAAAACCAGCAAACGGAAGAGAAGAGCCATTGAATCACGTAGAAGCAGAGAGACAACGACGAGAGAAATTAAACCAGAAATTCTACGCTCTCCGAGCCGTAGTTCCAAACGTATCTAAAATGGACAAGGCCTCGCTGCTCGGCGACGCAGTTTCATACATCAACGAGCTCAAATCGAAGCTCCAAATCATAGAAACAGAGAAAACAGAGATGGGAAACCATCTAGAGTTCATCAAGAAGGAGATGGGAGGGAAAGATCTAGGGCATTACACAAACACAATCGATCAAGATCTAAAAACAGGGAACAGAAAAGTAATGGATATAGAGATCGAGGTTAAAATCATGGGATGGGACGCAATGATACGGATTCAAAGCAGTAAGAAGAATCATCCGGCGGCGAGATTGATGACGGCGTTGAAGGATTTGGATTTGGAAATGCTTCATGCGAGTGTGTCTGTAGTGAATGACCTGATGATTCAACAGGCGACGGTGAAGATGGGGAGCAGATGTTACACGCAGGAGCAGCTGAAAATGGCTCTGATCGCCCGGGTCGGCGGCGGCGGAATGATGTAG 1905 50.92 MTDYRLSTMNLWTDENASLMDAFMNSDLSSYWAPSAASSHSLHNQPPPQSSASTSTPPPDPPKSVAVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYPDGSVLGWGDGYYKGEEDKGKGKAKVVTSAAEQAHRKKVLRDLNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFVNGVGLPSQAFFDSTPIWISGADRLSASACERARQGKVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETSSWISGTTAAASTADEGENDPSSMWISEPSSTIATTVPSGDVPRKLTQSENHKQSQSFLNFSDYGFESNPSKSITTDTTTTTTTTNTPSFKPESGGMLNFGSGNIFSSHSQYITDEQNEKKRSPPSRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKSIEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQIIETEKTEMGNHLEFIKKEMGGKDLGHYTNTIDQDLKTGNRKVMDIEIEVKIMGWDAMIRIQSSKKNHPAARLMTALKDLDLEMLHASVSVVNDLMIQQATVKMGSRCYTQEQLKMALIARVGGGGMM 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8631197 8633101 - CmoCh16G012080.1 Cmo16g01208 400243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01208 634 Pfam Helix-loop-helix DNA-binding domain 456 501 IPR011598 GO:0046983
Cmo16g01208 634 MobiDBLite consensus disorder prediction 293 314 - -
Cmo16g01208 634 MobiDBLite consensus disorder prediction 411 462 - -
Cmo16g01208 634 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 455 520 IPR036638 GO:0046983
Cmo16g01208 634 MobiDBLite consensus disorder prediction 388 405 - -
Cmo16g01208 634 Gene3D - 444 527 IPR036638 GO:0046983
Cmo16g01208 634 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 73 253 IPR025610 -
Cmo16g01208 634 MobiDBLite consensus disorder prediction 329 462 - -
Cmo16g01208 634 MobiDBLite consensus disorder prediction 37 63 - -
Cmo16g01208 634 PANTHER MYC 11 628 IPR045084 GO:0003700|GO:0006355
Cmo16g01208 634 SMART finulus 458 507 IPR011598 GO:0046983
Cmo16g01208 634 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 452 501 IPR011598 GO:0046983
Cmo16g01208 634 MobiDBLite consensus disorder prediction 329 353 - -
Cmo16g01208 634 CDD bHLH_AtAIB_like 449 525 - -
Cmo16g01208 634 PANTHER TRANSCRIPTION FACTOR MYC2 11 628 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo16g01208 Cmo19g00251 CCT
Cmo02g01657 Cmo16g01208 CCT
Cmo06g00657 Cmo16g01208 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01208 Cmo-Chr16:8631197 Cmo19g00079 Cmo-Chr19:435281 3.36E-13 dispersed
Cmo17g00410 Cmo-Chr17:2712186 Cmo16g01208 Cmo-Chr16:8631197 3.10E-22 transposed
Cmo16g01208 Cmo-Chr16:8631197 Cmo19g00251 Cmo-Chr19:1832010 0 wgd
Cmo16g01208 Cmo-Chr16:8631197 Cmo02g01657 Cmo-Chr2:9546095 0 wgd
Cmo16g01208 Cmo-Chr16:8631197 Cmo06g00657 Cmo-Chr6:3318070 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11337 PF14215 bHLH-MYC_N 1.10E-52 CL0161 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01208 K13422 - csv:101205372 1056.97