Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01224 ATGGTTTCGAGGTCTTATTCTAACTTGTTAGAGCTTGCTTCTGGTGGTTGTTCTCCTACTTTTGGCCTTGGCCGAGAGAAGAAGAGGCTTCCTAGAGTGGCTACTGTGGCTGGAGTCTTGTCTGAACTTGACGATGATAGCTGCAACAGCACTGGTTCGGATGCCCTTTCGTCGGTATCGCAAGACCGTATGATCATTGTTGGGAATCAGCTCCCGATTCGAGCACATCGAGACGATAATGGAGAATGGGAGTTTAGTATGGATGAAGATTCACTTCTTTTACAGCTTAAAGATGGACTTGGAGAAGATGTGGAGGCGATTTATATTGGTTGTCTTAGAGAAGAGGTTGATCCAAGAGAGCAAGATGATGTTGCACAAACACTCTTGGATCGATTCAAGTGTGTCCCGACGTTCCTTCCTCCCGAGCTTTTTAGTAAATTTTATCATGGATTCTGCAAGCAACATTTATGGCCATTGTTTCACTATATGCTTCCCTTGTCACCGGACCTTGGTGGTCGATTCGATAGGTCGCTTTGGCAAGCGTATCTTTCCGTGAATAAGATATTTGCAGATAAAGTTATGGAAGTGATTAGTCCTGATGATGACTTCGTTTGGGTTCATGATTACCATTTGATGGTTTTGCCAACATTTTTGAGGAAGAGGTTTAACAGGGCAAAGCTCGGATTCTTCCTACATAGTCCATTTCCTTCGTCCGAGATTTATCGAACCCTTCCCGTAAGAGATGAACTTCTTCGAGCACTATTGAACTCTGATCTCATTGGCTTCCACACGTTTGATTATGCTAGGCACTTTTTATCTTGCTGTAGCCGAATGCTCGGTTTGTCTTATCAATCTAAGCGAGGCTACATTGGGCTTGAATACTACGGTCGTACGGTGAGTATTAAGATTCTTCCTGTCGGTATTCATATCGGTCAGCTACAGAATGTATTGAATCTGCCTGAGACGGTATCCAAAGTTGCTGAATTGCAAGAGCGGTTCAAGGGTCAAACTGTTTTGCTCGGGGTCGATGATATGGACATATTTAAAGGGATCAGCCTGAAACTTTTGGCGTTCGAACAATTGCTCCGACAACATCCCGAGAGATGGGGTAAAGCTGTGTTGGTACAGATTGCGAACCCTGCACGAGGCAGAGGGAAAGATGTACAGGAGGTTATGGCTGAAACTACTGCAACGGTGGATAGAATTAATGCAACATTCAGAAGGCCAGGATATGAGCCTGTGGTTTTGATCAACACTCCCTTGCAGTTTTACGAGCGAAACGCTTATTATGCAATTGCTGAATGCTGCCTTGTTACAGCGGTGAGAGACGGGATGAATCTTATACCTTACGAGTATATTATATGTCGACAAGGCAACGAAGAACTCGACAATGTTCTCGGGCTAAATCCTTCAACTCCAAAGAAGAGCATGCTCGTGTTGTCTGAGTTTATTGGGTGTTCACCATCACTTAGTGGTGCTATTCGTGTTAATCCTTGGAATATTGAAGCTGTCACCGAAGCGATGGACTCTGCCCTGGTAATCCCGGAGGCCGAAAAGCAACTGCGACATGAAAAGCATTATAGGTATGTTAGTACGCACGATGTTGCGTATTGGGCACGAAGCTTTTTGCAGGATTTGGGCAGGGCTTGCAGAGACCATTCCATGAGGAGGTGCTGGGGCATAGGTTTCGGTTTAGGATTTCGAGTCATTGCCCTGGATCCAAATTTCAGGAAGCTTTCGGTTGATCATATCGTTTCGGTGTATAAACGAACCTGTCACCGAGCAATTTTGTTAGATTATGATGGTATCATGATGCTTCCTGGATCGATTAGTATGAATCCAACTTCAGAAGCCCTTGGAATCCTGAACAACCTGTGTAAAGATCCTAAAAATGTCGTGTTCCTCGTTAGCGGAAAGGATCGAAAAACTCTGACCGAATGGTTTTCACAGTGCGAAAAACTTGGATTAGCTGCAGAACATGGTTTTTATCTTAGGCCAAATCATACAGCAGATTGGGAGACGTGTGTAGGTGTGACCGATTTCGACTGGAAACAGATTGCAGAACCCGTTATGCAATTGTATACCGAGACAACCGATGGCTCTACAATCGAAACTAAAGAGAGTGCGCTCGTTTGGAACTACCTTTACGCGGATCCTGATTTCGGGTCGTGCCAGGCCAAGGAACTTTTAGATCACCTGGAAAGTGGTGTAAACAAGGGCATTGTAGCAGAACATCTCTTGCAAACAATGAAGGAGAAAGGAATGCTTCCCGATTTCGTTCTATGCATTGGAGACGACAGGTCGGACGAGGATATGTTCGAGGTGATAACAAGTGCAAAAGCCACCCTTCCTCCCGGTGCCGAAGTGTTCGGTTGCACCGTTGGCCAGAAACCGAGCAAGGCTAAGTACTACTTAGAAGACACACACGAAATCTTGAGAATGTTACAAGGTCTCACCCATGCGTCCGAGCATGCCGCTAGAGCTGCTCCGCAGATGACGACGACGACGACGACAACGACGCCTCACAGAGTGGTAATTTCAGAGAGTAAATAA 2553 45.4 MVSRSYSNLLELASGGCSPTFGLGREKKRLPRVATVAGVLSELDDDSCNSTGSDALSSVSQDRMIIVGNQLPIRAHRDDNGEWEFSMDEDSLLLQLKDGLGEDVEAIYIGCLREEVDPREQDDVAQTLLDRFKCVPTFLPPELFSKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRAKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQNVLNLPETVSKVAELQERFKGQTVLLGVDDMDIFKGISLKLLAFEQLLRQHPERWGKAVLVQIANPARGRGKDVQEVMAETTATVDRINATFRRPGYEPVVLINTPLQFYERNAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEELDNVLGLNPSTPKKSMLVLSEFIGCSPSLSGAIRVNPWNIEAVTEAMDSALVIPEAEKQLRHEKHYRYVSTHDVAYWARSFLQDLGRACRDHSMRRCWGIGFGLGFRVIALDPNFRKLSVDHIVSVYKRTCHRAILLDYDGIMMLPGSISMNPTSEALGILNNLCKDPKNVVFLVSGKDRKTLTEWFSQCEKLGLAAEHGFYLRPNHTADWETCVGVTDFDWKQIAEPVMQLYTETTDGSTIETKESALVWNYLYADPDFGSCQAKELLDHLESGVNKGIVAEHLLQTMKEKGMLPDFVLCIGDDRSDEDMFEVITSAKATLPPGAEVFGCTVGQKPSKAKYYLEDTHEILRMLQGLTHASEHAARAAPQMTTTTTTTTPHRVVISESK 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8764732 8769546 - CmoCh16G012240.1 Cmo16g01224 400259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01224 850 Gene3D Glycogen Phosphorylase B; 315 531 - -
Cmo16g01224 850 CDD HAD_TPP 595 810 - -
Cmo16g01224 850 Pfam Trehalose-phosphatase 597 737 IPR003337 GO:0003824|GO:0005992
Cmo16g01224 850 Gene3D Glycogen Phosphorylase B; 55 314 - -
Cmo16g01224 850 Gene3D - 593 711 IPR023214 -
Cmo16g01224 850 Gene3D - 722 832 IPR023214 -
Cmo16g01224 850 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 1 825 - -
Cmo16g01224 850 CDD GT20_TPS 63 546 IPR001830 GO:0003824|GO:0005992
Cmo16g01224 850 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 825 IPR001830 GO:0003824|GO:0005992
Cmo16g01224 850 TIGRFAM T6PP: trehalose-phosphatase 593 819 IPR003337 GO:0003824|GO:0005992
Cmo16g01224 850 Pfam Glycosyltransferase family 20 63 546 IPR001830 GO:0003824|GO:0005992
Cmo16g01224 850 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 550 - -
Cmo16g01224 850 SUPERFAMILY HAD-like 594 818 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00655 Cmo-Chr6:3295418 Cmo16g01224 Cmo-Chr16:8764732 0 dispersed
Cmo07g00166 Cmo-Chr7:878233 Cmo16g01224 Cmo-Chr16:8764732 0 dispersed
Cmo11g01986 Cmo-Chr11:13631629 Cmo16g01224 Cmo-Chr16:8764732 0 dispersed
Cmo16g01224 Cmo-Chr16:8764732 Cmo19g01042 Cmo-Chr19:9093586 0 dispersed
Cmo16g01224 Cmo-Chr16:8764732 Cmo04g01112 Cmo-Chr4:5669684 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01224 K16055 - csv:101207192 1622.06