Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01231 ATGAACCTCACGAACTTTACGGAAGGCGCTTCGAAGTTTCTCTCTCTTACCTCTCTCTCTCTCTCTCTCTCGCCGGTGAATCTCCTTTTCCTCTCGTCGGTAAAGTGCACGCCGTCTCCGAGCACTGCCGTCTTCAGCCTCCGAGATTCTCTCTTTATTGCCGCTTGCGTGTTTTCGTCGCTTTCCTCCGATTCCGCTCTGGAACCTCTGGATCTCGGAAAATCTGGGTTTTGGTTTTTGGATTTTCGATTTGTTTTAACTCTGTTTCTCTGTGGTGGTGCTGTTTCGACGAAGAGAACGAAGACGGAGGCGAGTAAGAATAAGACGCAGCTCCGGGATGAGATGGTGGAGGGAAAAAATTGTAAATCGAGGGAGGATAGAAATGGGCTAGCTCTTCTGAAGCTCAAGAGGCTTCAGGCTACAAATTCTGAAACTGCCAACAAAACTTCATCTGTCAAGAATATGATGAATAGAAGTGGAGGTGATGCTTTAAGGGTCTCATCTACTTGTGGTGTGAGATTACTTAGTGGCAATGTAGAAACCTTTTCTCGTTCAAGTGGCATGTCAAATGAGAGGGATGTCTTTTCTAAAAGGAGAGTAGACAAGTTTGAGTACGATGATTTAGAGTGGACCGAAAAGATTCCGGAATGCCCTGTATATTCTCCGTCAAAGGAGGAATTTGAGGATCCTTTGGTCTATTTGCAAAAGATAGCTCCTGAAGCCTCAAAATACGGCATATGCAAGATTATCTCCCCACTGATTGCTTCTGTTCCTGCTGGTGCTGTATTAAGTAAGGAGAAACCAGGTTTCAAGTTTACAACGAGAGTGCAACCTTTTCGCTTTGCTGAATGGGATACTGATGATCAGGTTACCTTTTACATGAGTGGAAGGAACTATTCATTTCGCGATTTTGAAAAATTTGCGAACAAGATATATGCCCGTAGATATAGTAGTTCTGGATGTCTACCTGCCTCATATATGGAAAAGGAATTTTGGCGTGAAATTTCTTGTGGAAGGACGGAAAGTGTAGAATATGCTTGCGATGTTGAGGGTAGTGCCTTTTCATCTTCTCCATCTGATGAGCTTGGGACAAAATCTTTCTCGCCTGCCCAAGTCCATACTGCACCTGCTGGAAAATCCAATACCGGTAGGGTGGGAGTAACGGACCCCATGCTTTATATTGGAATGCTGTTTAGTATGTTTGCGTGGCATGTGGAGGATCATTATCTATACAGTATTAATTATCATCATTGTGGGGCATCTAAAACTTGGTATGGCATTCCTGGTCAGGCAGCTTTGCAGTTTGAAAATGTTGTCAGGGAGCACGTATACACCCAGGATATCTTATCAACTGCTGGAGAGGAGGGAGCATTTGACGTACTTCTGGGGAAAACAACGTTGTTTCCACCCAGTATTTTGTTGGATCATAAGGTGCCTGTATACAGAGCTGTCCAGAAACCTGGGGAGTTTGTAATCACCTTCCCCAGAGCATATCATGCTGGATTCAGTCATGGCTTCAATTGTGGTGAAGCAGTAAACTTTGCAATGGGTGATTGGTTCCCTCTGGGTGCTGTTGCCAGCCAGCGGTATGCACTCCTGAACAGGATGCCTCTACTTCCTCATGAAGAGCTTCTATGTAAAGAAGCAATGCTTCTCTATACAAATTCAGAACTTGTAGACCCACATTATGCTTCTGCAGAGTCAACCTCTCATTATTCTGTCAAGACTTCTTTTGTGAGTATGATTCGCTTCCAGCATCGCGCTCGGTGGTCTTTGATGCAATCAAGAACATGCACTGGTGTTTCACCAAATTTTCATGGAACCATTCTTTGCAGCTTGTGCAAACGTGACTGCTATATTTCTTATATCAACTGCAATTGTTATGGACATCCAGTGTGTCTTCGTCATGATATCAAATCTCTGAACTTCTCGTGTGGTAGCAACCGTACACTCTTCTTGTGTGAGGATATTTTAGATATGGAATCTGCAGCTCAGAAATTTGAGCAGGAGTGTGGAACATTGGATGAGATTGGGGGGCAAGCTTATAATGGTGAAGAATTATATTCTTATCCTCTGTTAAATTTATTTAAACGAGCTGTTGTGGACGGATACACTCCTTATTGCAAGATAGAAGTGCAGTTGAATTCTGAATTTACTGCTGCTGCTATCTGTCGCTTGGGAGAAAATGAGTGTGTTTCCAGTAGCCAGCCTACACAAAGTTGTATCACTGAAAACCATAGACCTGAATCATCAGATCCATCTCTCTCTTTTGAAGCGTCAACTTTTTGTTCAGTTGTAGACTATAACGAAACATTGTCCACCACTAGCCATGTACAAAAAAATTCAAGTTTTGAACAGTCTTCTGAAGTTTCGAACAGGGCACTTGAATCATCACGTAACCATTGCTCAAGTAAATCTCCAGGCAGTGTACGTGTATCAGAGCTAACGACTGTTGTAGATCGAGAAAGTGATGATTCTGATACAGAAATTTTTAGGGTCAAGCGTCGCCCTCTGAAGCTGGATAAAAAGACCGGGAGCGATGCCACATCTTTAAAGCATTTTGCTAGCCAGCTGGATGGCCGCAAAAGATTGAAGAGACTCCAAACAAATGGGACTTCCGAGGGAGTAACGCCATCGTATGGTCGTGGAACTGACAACTCACGTTATAAATTATACCCTTCCAGTACTTACAAGGACTCTGCAGAGAGTGATGCAATTGACAAGTATAGCAGAGGGAGTACTATTCCCATCTCTACTATGTGCCAGAGATTCAGCAAGGAGAAACTAAGTAGTAATAGACAGCGCGTCTATGAACTCAACAATCGCAGGAGGGAAAGGTTTCAGCATGAGATGGGAAAGCCCAAAAGGGTACTACATCCACATCCCTCTATGGAGATTGGGCCAAAGCGTGTCAAAATTAGAGGCCCAACACTCGGTCGGCCCGATTGA 2949 43.71 MNLTNFTEGASKFLSLTSLSLSLSPVNLLFLSSVKCTPSPSTAVFSLRDSLFIAACVFSSLSSDSALEPLDLGKSGFWFLDFRFVLTLFLCGGAVSTKRTKTEASKNKTQLRDEMVEGKNCKSREDRNGLALLKLKRLQATNSETANKTSSVKNMMNRSGGDALRVSSTCGVRLLSGNVETFSRSSGMSNERDVFSKRRVDKFEYDDLEWTEKIPECPVYSPSKEEFEDPLVYLQKIAPEASKYGICKIISPLIASVPAGAVLSKEKPGFKFTTRVQPFRFAEWDTDDQVTFYMSGRNYSFRDFEKFANKIYARRYSSSGCLPASYMEKEFWREISCGRTESVEYACDVEGSAFSSSPSDELGTKSFSPAQVHTAPAGKSNTGRVGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGQAALQFENVVREHVYTQDILSTAGEEGAFDVLLGKTTLFPPSILLDHKVPVYRAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAMGDWFPLGAVASQRYALLNRMPLLPHEELLCKEAMLLYTNSELVDPHYASAESTSHYSVKTSFVSMIRFQHRARWSLMQSRTCTGVSPNFHGTILCSLCKRDCYISYINCNCYGHPVCLRHDIKSLNFSCGSNRTLFLCEDILDMESAAQKFEQECGTLDEIGGQAYNGEELYSYPLLNLFKRAVVDGYTPYCKIEVQLNSEFTAAAICRLGENECVSSSQPTQSCITENHRPESSDPSLSFEASTFCSVVDYNETLSTTSHVQKNSSFEQSSEVSNRALESSRNHCSSKSPGSVRVSELTTVVDRESDDSDTEIFRVKRRPLKLDKKTGSDATSLKHFASQLDGRKRLKRLQTNGTSEGVTPSYGRGTDNSRYKLYPSSTYKDSAESDAIDKYSRGSTIPISTMCQRFSKEKLSSNRQRVYELNNRRRERFQHEMGKPKRVLHPHPSMEIGPKRVKIRGPTLGRPD 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8818560 8827116 + CmoCh16G012310.1 Cmo16g01231 400266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01231 982 MobiDBLite consensus disorder prediction 869 888 - -
Cmo16g01231 982 MobiDBLite consensus disorder prediction 952 982 - -
Cmo16g01231 982 MobiDBLite consensus disorder prediction 779 809 - -
Cmo16g01231 982 PANTHER LYSINE-SPECIFIC DEMETHYLASE 144 977 - -
Cmo16g01231 982 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 144 977 - -
Cmo16g01231 982 SUPERFAMILY Clavaminate synthase-like 383 547 - -
Cmo16g01231 982 Pfam C5HC2 zinc finger 611 662 IPR004198 -
Cmo16g01231 982 SMART cupin_9 361 531 IPR003347 -
Cmo16g01231 982 MobiDBLite consensus disorder prediction 867 888 - -
Cmo16g01231 982 Pfam jmjN domain 218 250 IPR003349 -
Cmo16g01231 982 SMART JmjN_1 216 259 IPR003349 -
Cmo16g01231 982 Gene3D Cupin 210 536 - -
Cmo16g01231 982 MobiDBLite consensus disorder prediction 952 968 - -
Cmo16g01231 982 ProSiteProfiles JmjN domain profile. 217 258 IPR003349 -
Cmo16g01231 982 Pfam JmjC domain, hydroxylase 391 514 IPR003347 -
Cmo16g01231 982 ProSiteProfiles JmjC domain profile. 357 531 IPR003347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01231 - - - cmax:111465200 1690.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01231 Cmo-Chr16:8818560 Cmo18g00183 Cmo-Chr18:1259893 5.72E-67 dispersed
Cmo16g01231 Cmo-Chr16:8818560 Cmo19g00232 Cmo-Chr19:1610482 0 wgd
Cmo16g01231 Cmo-Chr16:8818560 Cmo02g01675 Cmo-Chr2:9606960 5.66E-13 wgd
Cmo16g01231 Cmo-Chr16:8818560 Cmo06g00639 Cmo-Chr6:3208721 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g719 . . . . . . . . . Cmo16g01231 . . . . . Cpe14g00981 . . . . . . . . . . . . . . . Cone8ag0485 . . . Lsi07g01171 . . Cme06g02447 . Blo19g00246 . . Bpe08g00806 . . . . . . . Cma16g01181 . Car16g01115 . . . . . . . . . . . . . . . . . Csa03g00140 Chy06g02167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001654 1 9 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 1 2 2 4 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11340 PF02373 JmjC 1.00E-39 CL0029 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01231 Cmo_Chr16 FPKM 7.426492 10.52853 12.003336 14.194515 5.748569 3.519297 4.901809 25.857409 30.35042 33.706497