Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01238 ATGGCGAGATCCACAAGCAAGGACGCTCAAGCTCTTTTCCAGTCGCTTCGCTCAGCTTATGCTGCCACTCCAACGACTCTCAAGATCATTGATCTCTACGTGATTTATGCTGTGTTCACGGCTCTGATCCAGGTAGCATACATGGCGATTGTTGGATCGTTCCCATTCAACTCCTTCCTCTCTGGCGTTCTTTCTTGTATCGGGACAGCTGTCCTTGCTGTTTGTCTCCGGATTCAAGTTAATAAAGAAAACAAGGAGTTCAAGGATTTGGCCCCAGAGCGAGCTTTTGCTGATTTCGTTCTGTGCAACCTGGTTCTCCATTTGGTGATCATCTGCTTCCTCGGATAA 348 47.7 MARSTSKDAQALFQSLRSAYAATPTTLKIIDLYVIYAVFTALIQVAYMAIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIICFLG 115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8869934 8872228 + CmoCh16G012380.1 Cmo16g01238 400273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01238 115 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT DAD1 2 115 - -
Cmo16g01238 115 Pfam DAD family 11 115 IPR003038 GO:0008250|GO:0016021
Cmo16g01238 115 PIRSF DAD1_Ost2 1 115 IPR003038 GO:0008250|GO:0016021
Cmo16g01238 115 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT DAD1 2 115 IPR003038 GO:0008250|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01238 K12668 OST2, DAD1; oligosaccharyltransferase complex subunit epsilon - csv:101204006 216.853
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00635 Cmo16g01238 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01238 Cmo-Chr16:8869934 Cmo06g00635 Cmo-Chr6:3160939 2.86E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g729 . . . . . . . . Cmo06g00635 Cmo16g01238 . . . . . Cpe14g00986 . . . . . . . . Cla10g00126 Cam10g0126 . . Clacu10g0131 Cmu10g0978 . Cone8ag0492 Cone12ag0490 . . Lsi07g01161 . . . Blo03g00884 . Bda07g00074 . . Bpe11g00314 . . . . . Cma06g00626 Cma16g01190 Car06g00561 Car16g01122 . . . . . . . . . . . . . . . . . Csa03g00134 Chy06g02173 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009636 1 2 1 1 1 1 2 0 0 1 1 1 2 0 1 2 1 2 2 0 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01238 Cmo_Chr16 FPKM 3.739163 4.268991 8.799052 9.414447 43.998375 39.828476 45.383087 10.684397 11.392658 13.009445