Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01240 ATGAGTGGCAGTGAGATGGAGAAACCACCAAAAGACAAGGAGACGAAGACACCGCCTCCTACTACCCAGGAGCAGACTTCAACCACAAGCGCTGGCGCAGTTAATCCTGATTGGTCAGGTTTTCAGGCATATTCTCCTATTCCTCCACATGGTTTCTTGGCATCAAGCCCTCAAGCCCACCCATATATGTGGGGAGTTCAGCATATTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCACCTGGTGGCATATACGCTCATCCGTCCATTCCCCCGGGATCATATCCTTTTAGCCCATTTGCAATGCCTTCTCCAAATGGCATCACTGAGGCCTCTGGTAATACCGCAGGCAGTTTGGAGGGAGACGTTAAGCTACCTGAAGTGAAGGAAAAGCTGCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACAGGGAAGAATAATGAGCTCGGTAAAACATCTGGAACATCTGCCAATGGAGCATACTCTAAGAGTGCTGAGAGTGCCAGCGAAGGTTCAAGTGAAGGAAGCGATGCCAATTCTCAAAATGAATCCCAACCTAAGTTAGGTTCCAGGCAAGACACTTCGGAAGTTGAAGCATCTCAGAATGGTAACTCTATGCATGGTACTCAAAACGGAGGATCTAATACTCAGGCAATGGCTGCCATCCCACTGGCAACTGCTGGGGCCCCGGGTGTCGTTCCTGGTCCCCCAACCAACTTAAATATTGGAATGGACTATTGGGGTGCACCATCCACTATCCCTGCAATGCGTGGAAAGGTTCAATCCGCTCCAGTTGCCGGACTAGTTACCACTGGATCTCGGGATGGTATACAGTCACAACTTTGGTTGCAGGATGAGAGAGAGATTAAACGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGACGTTCCCGGTTACGTAAGCAGGCAGAATGTGACGAATTAGCACACCGAGCTGAAGCTTTACAAGAAGAGAATGCCAGTCTTAGGTCTGAAGTGAACCGGATAAGGAGTGATTATGAACAACTACTCTCAGAGAATGCTTCTCTGAAGGAACGACTCGGGGAAGTTCCAGGAAATGAAGAACTAAGGACCAGCAGGAACGGCCAGCACTCGAGTAACGAAACCACTCAACTTACAGAGTCAGCGGTCGTGCAAATCGGTAACAAGAATTGA 1209 47.97 MSGSEMEKPPKDKETKTPPPTTQEQTSTTSAGAVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFAMPSPNGITEASGNTAGSLEGDVKLPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTSGTSANGAYSKSAESASEGSSEGSDANSQNESQPKLGSRQDTSEVEASQNGNSMHGTQNGGSNTQAMAAIPLATAGAPGVVPGPPTNLNIGMDYWGAPSTIPAMRGKVQSAPVAGLVTTGSRDGIQSQLWLQDEREIKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVNRIRSDYEQLLSENASLKERLGEVPGNEELRTSRNGQHSSNETTQLTESAVVQIGNKN 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8879499 8883695 - CmoCh16G012400.1 Cmo16g01240 400275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01240 402 CDD bZIP_plant_GBF1 301 351 IPR045314 GO:0003700|GO:0006355
Cmo16g01240 402 Coils Coil 316 364 - -
Cmo16g01240 402 Pfam bZIP transcription factor 296 358 IPR004827 GO:0003700|GO:0006355
Cmo16g01240 402 Pfam G-box binding protein MFMR 2 96 IPR012900 -
Cmo16g01240 402 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 298 361 IPR004827 GO:0003700|GO:0006355
Cmo16g01240 402 MobiDBLite consensus disorder prediction 1 42 - -
Cmo16g01240 402 MobiDBLite consensus disorder prediction 146 225 - -
Cmo16g01240 402 PANTHER BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN 1 397 - -
Cmo16g01240 402 MobiDBLite consensus disorder prediction 374 402 - -
Cmo16g01240 402 MobiDBLite consensus disorder prediction 301 321 - -
Cmo16g01240 402 MobiDBLite consensus disorder prediction 1 18 - -
Cmo16g01240 402 SUPERFAMILY Leucine zipper domain 299 355 IPR046347 GO:0003700|GO:0006355
Cmo16g01240 402 Pfam Disordered region downstream of MFMR 135 262 - -
Cmo16g01240 402 MobiDBLite consensus disorder prediction 361 402 - -
Cmo16g01240 402 SMART brlzneu 296 360 IPR004827 GO:0003700|GO:0006355
Cmo16g01240 402 Gene3D - 299 353 - -
Cmo16g01240 402 MobiDBLite consensus disorder prediction 139 225 - -
Cmo16g01240 402 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 303 318 IPR004827 GO:0003700|GO:0006355
Cmo16g01240 402 MobiDBLite consensus disorder prediction 19 36 - -
Cmo16g01240 402 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 397 IPR044827 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01685 Cmo16g01240 CCT
Cmo06g00633 Cmo16g01240 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01240 Cmo-Chr16:8879499 Cmo07g00502 Cmo-Chr7:2267677 1.34E-60 dispersed
Cmo16g01240 Cmo-Chr16:8879499 Cmo02g01685 Cmo-Chr2:9670417 6.11E-177 wgd
Cmo16g01240 Cmo-Chr16:8879499 Cmo06g00633 Cmo-Chr6:3138763 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11342 PF16596 MFMR_assoc 1.20E-49 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01240 K09060 - csv:101206627 689.108