Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g01240 | ATGAGTGGCAGTGAGATGGAGAAACCACCAAAAGACAAGGAGACGAAGACACCGCCTCCTACTACCCAGGAGCAGACTTCAACCACAAGCGCTGGCGCAGTTAATCCTGATTGGTCAGGTTTTCAGGCATATTCTCCTATTCCTCCACATGGTTTCTTGGCATCAAGCCCTCAAGCCCACCCATATATGTGGGGAGTTCAGCATATTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCACCTGGTGGCATATACGCTCATCCGTCCATTCCCCCGGGATCATATCCTTTTAGCCCATTTGCAATGCCTTCTCCAAATGGCATCACTGAGGCCTCTGGTAATACCGCAGGCAGTTTGGAGGGAGACGTTAAGCTACCTGAAGTGAAGGAAAAGCTGCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACAGGGAAGAATAATGAGCTCGGTAAAACATCTGGAACATCTGCCAATGGAGCATACTCTAAGAGTGCTGAGAGTGCCAGCGAAGGTTCAAGTGAAGGAAGCGATGCCAATTCTCAAAATGAATCCCAACCTAAGTTAGGTTCCAGGCAAGACACTTCGGAAGTTGAAGCATCTCAGAATGGTAACTCTATGCATGGTACTCAAAACGGAGGATCTAATACTCAGGCAATGGCTGCCATCCCACTGGCAACTGCTGGGGCCCCGGGTGTCGTTCCTGGTCCCCCAACCAACTTAAATATTGGAATGGACTATTGGGGTGCACCATCCACTATCCCTGCAATGCGTGGAAAGGTTCAATCCGCTCCAGTTGCCGGACTAGTTACCACTGGATCTCGGGATGGTATACAGTCACAACTTTGGTTGCAGGATGAGAGAGAGATTAAACGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGACGTTCCCGGTTACGTAAGCAGGCAGAATGTGACGAATTAGCACACCGAGCTGAAGCTTTACAAGAAGAGAATGCCAGTCTTAGGTCTGAAGTGAACCGGATAAGGAGTGATTATGAACAACTACTCTCAGAGAATGCTTCTCTGAAGGAACGACTCGGGGAAGTTCCAGGAAATGAAGAACTAAGGACCAGCAGGAACGGCCAGCACTCGAGTAACGAAACCACTCAACTTACAGAGTCAGCGGTCGTGCAAATCGGTAACAAGAATTGA | 1209 | 47.97 | MSGSEMEKPPKDKETKTPPPTTQEQTSTTSAGAVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFAMPSPNGITEASGNTAGSLEGDVKLPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTSGTSANGAYSKSAESASEGSSEGSDANSQNESQPKLGSRQDTSEVEASQNGNSMHGTQNGGSNTQAMAAIPLATAGAPGVVPGPPTNLNIGMDYWGAPSTIPAMRGKVQSAPVAGLVTTGSRDGIQSQLWLQDEREIKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVNRIRSDYEQLLSENASLKERLGEVPGNEELRTSRNGQHSSNETTQLTESAVVQIGNKN | 402 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 8879499 | 8883695 | - | CmoCh16G012400.1 | Cmo16g01240 | 400275 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g01240 | 402 | CDD | bZIP_plant_GBF1 | 301 | 351 | IPR045314 | GO:0003700|GO:0006355 | |
Cmo16g01240 | 402 | Coils | Coil | 316 | 364 | - | - | |
Cmo16g01240 | 402 | Pfam | bZIP transcription factor | 296 | 358 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo16g01240 | 402 | Pfam | G-box binding protein MFMR | 2 | 96 | IPR012900 | - | |
Cmo16g01240 | 402 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 298 | 361 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo16g01240 | 402 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Cmo16g01240 | 402 | MobiDBLite | consensus disorder prediction | 146 | 225 | - | - | |
Cmo16g01240 | 402 | PANTHER | BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN | 1 | 397 | - | - | |
Cmo16g01240 | 402 | MobiDBLite | consensus disorder prediction | 374 | 402 | - | - | |
Cmo16g01240 | 402 | MobiDBLite | consensus disorder prediction | 301 | 321 | - | - | |
Cmo16g01240 | 402 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cmo16g01240 | 402 | SUPERFAMILY | Leucine zipper domain | 299 | 355 | IPR046347 | GO:0003700|GO:0006355 | |
Cmo16g01240 | 402 | Pfam | Disordered region downstream of MFMR | 135 | 262 | - | - | |
Cmo16g01240 | 402 | MobiDBLite | consensus disorder prediction | 361 | 402 | - | - | |
Cmo16g01240 | 402 | SMART | brlzneu | 296 | 360 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo16g01240 | 402 | Gene3D | - | 299 | 353 | - | - | |
Cmo16g01240 | 402 | MobiDBLite | consensus disorder prediction | 139 | 225 | - | - | |
Cmo16g01240 | 402 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 303 | 318 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo16g01240 | 402 | MobiDBLite | consensus disorder prediction | 19 | 36 | - | - | |
Cmo16g01240 | 402 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 1 | 397 | IPR044827 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g01685 | Cmo16g01240 | CCT | |
Cmo06g00633 | Cmo16g01240 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo16g01240 | Cmo-Chr16:8879499 | Cmo07g00502 | Cmo-Chr7:2267677 | 1.34E-60 | dispersed | |
Cmo16g01240 | Cmo-Chr16:8879499 | Cmo02g01685 | Cmo-Chr2:9670417 | 6.11E-177 | wgd | |
Cmo16g01240 | Cmo-Chr16:8879499 | Cmo06g00633 | Cmo-Chr6:3138763 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11342 | PF16596 | MFMR_assoc | 1.20E-49 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g01240 | K09060 | - | csv:101206627 | 689.108 |