Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01244 ATGTTAGTTCTCTTTCTTGTCTCCTTCCGAGAATCCATAGCCGGAGTAGCCATGGCCGCTTTGCAGTACCTCGATTCTCTTCGCAACTCGCATCCTGAGCTCGCTGAATGGTACAATTCGCTAGCAGATCTGTACCAGAAGAAGCTTTGGCATCAGCTCACACTTAAGCTTGAGCAGTTCGTCGCTCTGACGGTCTTCCAGGCTGGTGATGCACTGATTCAGTTGTATCACAACTTCATCACTGATTTTGAGACCAAAATCAATCTTCTCAAGCTTGCACATTTTGCTGTGATTGTTTCTCGGCAATATGCTGAGAAAGAAGCTGCCATTAGTTATCTTGAAGGGATAATCGAGAAACTGAGGAGCACTAAAGAGCACCGCATAGAGGAGCCTATCCTTTATATTAAGATGCAAATAGCTATTTTTAAGCTTGAGCAAGGTGACCGAAAAGAGTGCAAGAAACTTTTGGAAGATGGAAAGAGCACTCTTGACAGCATGACTGACATTGATCCATCTGTTTATGCTAGCTATTACTGGGTTTCATCTCAATTTTACAAGTTCCGCCAAGAATTTGCTGAGTTCTATAAAAGTGCTCTTCTTTATCTCGCATATACTTCAGTGGAATCACTCTCAGACTCATTTAAATTGGATTTGGCCTTTGATTTGTCTCTTTCTGCACTTTGGGGAGATAACATCTACAACTTTGGAGAGCTTCTTGCACATCCTATTATCAAAAGTCTGTTGGGCACAAAGGTCGAGTGGCTTTACTACATTCTTCAGGCATTCAATGCTGGTGATTTAGTTCGCTATCAAGAATTATGCCAAGTCCATAATGCAGCTTTAAGGGCTCAACCGGCTTTAGTTGAAAATGAAAAGAAACTATTGGAGAAAATCAATATTCTCTGCCTCATGGAAATTATCTTCAGCCGGCCATCTGAAGATCGAACCATTCCATTGAAGGTTATAGCAGAACGAACAAAACTCTCTATTGAGGATGTGGAGCATCTACTAATGAAGAGCCTGTCTGTCCACCTTATAGAGGGTATCATCGATCAAGTCGAGGGAACGGTCCATGTTTCCTGGGTGCAACCAAGGGTTCTAGGCATTCCACAGATCAAATCCCTGCGAGACCGACTGGACAGTTGGGTGGATAAAGTGCATTCGACTTTGCTTTCAGTCGAGGCCGAGACGCCTGATCTAGTTGCATCATTCTCATGTGCTGGCTGGAGCTATCTTGCCTCCAGCTTTCTTGAACTATTTTTCTAG 1266 43.21 MLVLFLVSFRESIAGVAMAALQYLDSLRNSHPELAEWYNSLADLYQKKLWHQLTLKLEQFVALTVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYAEKEAAISYLEGIIEKLRSTKEHRIEEPILYIKMQIAIFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFYKFRQEFAEFYKSALLYLAYTSVESLSDSFKLDLAFDLSLSALWGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNAGDLVRYQELCQVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLKVIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWVDKVHSTLLSVEAETPDLVASFSCAGWSYLASSFLELFF 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8895175 8898848 - CmoCh16G012440.1 Cmo16g01244 400279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01244 421 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 18 402 IPR035298 -
Cmo16g01244 421 Gene3D - 241 360 - -
Cmo16g01244 421 Pfam PCI domain 255 360 IPR000717 -
Cmo16g01244 421 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 HOMOLOG B 18 402 - -
Cmo16g01244 421 SUPERFAMILY Winged helix DNA-binding domain 292 365 IPR036390 -
Cmo16g01244 421 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 289 382 - -
Cmo16g01244 421 ProSiteProfiles PCI domain profile. 191 364 IPR000717 -
Cmo16g01244 421 SMART PINT_4 289 382 IPR000717 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01244 K03039 PSMD13, RPN9; 26S proteasome regulatory subunit N9 - csv:101208086 704.131
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01244 Cmo-Chr16:8895175 Cmo04g02935 Cmo-Chr4:20787727 7.86E-06 dispersed
Cmo16g01244 Cmo-Chr16:8895175 Cmo06g00624 Cmo-Chr6:3102576 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g757 . . . . . Bpe07g00240 . . . Cmo16g01244 . . . . . Cpe14g00991 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma12g00241 . . . . Cma16g01197 . Car16g01127 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006085 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g01244 Cmo_Chr16 FPKM 82.109703 81.77404 79.786842 77.941765 75.443832 70.272133 73.898964 94.281548 90.439125 87.514893